| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_2374 |
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| Symbol | |
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| ID | 3671867 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | + |
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| Start bp | 2449603 |
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| End bp | 2450172 |
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| Gene Length | 570 bp |
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| Protein Length | 189 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637711079 |
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| Product | 16S rRNA processing protein RimM |
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| Protein accession | YP_316132 |
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| Protein GI | 74318392 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
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| TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.502569 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCGCCCA GCTGTCCGAC ACGGTCGCGC GTCTGGTCAA GCAGAACAAG CCCGCCGCCT
GATTTGGCTG AGTCCGAAGC CTGGGTCGTG ATGGGGCGGG TCAGCGCCCC CTTCGGCGTC
AAAGGCTGGG TCAAGGTCCA GCCCTTCAGC GAAGACCCGG GGACGCTGAT GGATTTCGAG
TCCTGGCGCG TCGGACGAGG CGAGCAGCAG GCGCAATACG CCGTCGAGGC CGTGCAGGAT
CACGGCAAGT CGCTGGTCGC CAAACTAGTC GGCATCGACG ACCGCGACGC GGCCTTTGCT
TTGCGAGGTC AGGAAGTCTC GGTGGCGAAA AGCGCGTTAC CGCCGCCGGA AGAGAACGAG
TTTTATTGGT CGGACCTGAT CGGCCTGACC GTGATGAACC GCGAAGGCGT CGAACTCGGC
AAGGTCGACA GCCTCATGGA AAGCGGCGCC CACGATCTGC TGGTCGTCAA AGGCAGGCGC
GAACATCTCA TTCCGTTCGT CGCGGCCTTC GTCGGCAAGG TCGACCTGGC CGGCGGGACC
GTCGAGGTCG ACTGGGGCGA GGACTACTAA
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| Protein sequence | MAPSCPTRSR VWSSRTSPPP DLAESEAWVV MGRVSAPFGV KGWVKVQPFS EDPGTLMDFE
SWRVGRGEQQ AQYAVEAVQD HGKSLVAKLV GIDDRDAAFA LRGQEVSVAK SALPPPEENE
FYWSDLIGLT VMNREGVELG KVDSLMESGA HDLLVVKGRR EHLIPFVAAF VGKVDLAGGT
VEVDWGEDY
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