| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_2247 |
|---|
| Symbol | ligD |
|---|
| ID | 3672308 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiobacillus denitrificans ATCC 25259 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007404 |
|---|
| Strand | + |
|---|
| Start bp | 2321679 |
|---|
| End bp | 2324219 |
|---|
| Gene Length | 2541 bp |
|---|
| Protein Length | 846 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637710952 |
|---|
| Product | ATP-dependent DNA ligase |
|---|
| Protein accession | YP_316005 |
|---|
| Protein GI | 74318265 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
|---|
| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAGC GCGACCCGCT TTCCACCTAC ACCGAGAAAC GCGATTTTTC GATCAGCCCG
GAGCCAGTGT CGGGCGGCCA GGCCAATGAG GCGGCGCGCT CGTTCGTCGT GCAGAAACAC
TGGGCGACGC GACTGCATTA CGACTTCCGG CTCGAACTCG ACGGCAGCAT GAAAAGCTGG
GCCGTACCGA AGGGGCCGAG CCTCGACCCC GCGGACAAGC GCATGGCCGT GCACGTCGAG
GACCACCCGA TCGCCTACAA CGCGTTCGAG GGGACGATCC CGCCCAGGCA ATACGGCGCC
GGCAAGGTCA TCATCTGGGA CAAAGGCACC TGGGTTCCGC TCGTCGATCC GCGCCGCGGC
TACGAGGAAG GCCATCTCAA ATTCGAACTC CACGGTCACA AGCTGCAGGG GCGGTGGGCG
CTCGTGCGCA TGAAGGGTAA AGGCGAAGCC AAGGAGCCCT GGCTCCTGAT CAAGGAAAAG
GACGAACATG CGCGCCCCGC CGCCGACTAC AGCGTCGTCG ACGCCCTGCC CGACAGCGTC
GCGGACAAGG ACGACGCCGC GGCCGTGACG AAGGCCGCGG CGCCGCGGCG GCGTGCAGGC
GAAACGCCGC GCCCGCGCAA GGCGCGCGCG GCGAAGGCCA CGGAAAAAGC GGGCGCGGCG
GCCGTCGAGG GCGCGGTGAA AAGCGCGCTG CCGGCGACGC TGGCCCCCCA GCTCGCGACG
CTCGCCGACA AGCCGCCGGA CGACGGCGAC GGCTGGGTCT ACGAGGTAAA GTTCGACGGC
TATCGCATGC TCGCGCGCAT CGACAAGACG GTCCGCCTGT TCACGCGCAA CGGCAACGAC
TGGAGCCACA GGCTCGCGCC GCTGGTCAAG GCGATCGAAG CGGCCGGGCT GCGGCCCGGC
TGGCTCGACG GCGAGGTCGT CGTACCGAAC GCGGCCGGCG TGCCGGACTT CCAGGCGCTG
CAGAACGCCT TCGACCAGGC GCGCGCGGAC GCCATCGTCT ACTACGTCTT CGACCTGCCG
TTCTACGACG GTTACGACCT GCGCGCGGCG CCGCTCGTCG CGCGCAAGGC GCTGCTCGCG
GGCTTGCTCG ACACGCCGCA CAGCGACGCG CTGCGCTTGA GTGAAAGCTT CGACGCAGCG
CCGCGCGACA TCCTCGCATC AGCCTGCAAG ATGGGGCTCG AGGGCGTGAT CGCGAAGCGC
CGCGACGCGC CCTACGTCTC GCGCCGCTCG ACCGACTGGC TCAAGCTCAA GTGCACGCGG
CGCCAGGAAT TCGTGATCGG CGGCTACACC GATCCGCGCG GCTCCCGGCC CGGGCTCGGC
TCGCTGCTGC TCGGCGTGCA CGACGCGCGC GGCGAACTCG TCTACGCCGG CAACGTCGGC
ACCGGCTTCG ACCACGGCAC GCTCGGCGAT CTCAGGAAAA AACTCGCGGC GCACGCGCGC
GACACGAGCC CGTTCGTCGA CGCGACGGGC ATCGCGGGCA AGCCGCACTG GGTCGACCCC
AAACTTGTCG CCGAGGTGTC GTTCGGCGAA TGGACCAAGA GCGGCCGGAT CCGCCACGCG
GTGTTCGAGG GGCTGCGGCT CGACAAGCGC GCGGCCAGCG TCGTCCGCGA GGAACCCGTT
GCCGCGGCGG CCGCCGCCCC GCGCCTGCCG GCCGATCTGA AGGTCTCGCA CCCGGAGCGC
GTGGTCGACA AGGCGAGCGG CACCACCAAG CTCGCGCTCA TCGCCTACTA CGCGCGGGTC
GCCCCGCTGA TGATGCCGCA CCTGAAGGCG CGGCCGGTGT CGCTGGTGCG CGCGCCCGAC
GGCGTGGGCG GATCGCTCTT TTTCCAGAAG CACGTCGAGG CGTCGCAGAT GCGCGGCGTC
AAGACGCTGC CGCGCACGCT CGACCCGGGT CACGCGCCGC TCATCGAGGT CGCCGCGGCC
GAGGGCCTGC TGACCGCAGC GCAGATGAAC GTGATCGAAT TCCATACCTG GAACGCGCGC
AAGACCCGGA TCGACAAGCC GGACCGCATG ACCTTCGACC TCGATCCCGG CGAGGGCGTC
GGCTGGACCA CGGTGCAGGA ATCCGCCCAC CTCGTGCGCG AATTTCTCTC CCAGCTCGGG
CTGGCGTCGT TTCTCAAGAC CAGCGGCGGC AAGGGCCTGC ACATCGTCGT GCCGCTCAAG
CGCCTGCACG ACTGGGATAC GGTCAAGGAT TTTTCGCACG CGATCGTGCG CCATCTCGCG
AGGACGCTGC CGCAACGCTT TGCCGCCAAG AGCGGGCCGA AAAACCGGGT CGGCAAGATC
TTCATCGATT ACCTGCGCAA CGGCTTCGGC GCGACCACGG TCGCCGCCTG GTCGGTGCGC
GCACGCCCAG GGCTCGGCGT CTCGGTGCCA CTCGAATGGC GCGAACTCGA CGCGCTCACG
AGCGCTGCGC AGTGGACGGT CCCGAACATC GACTCGCGCC TCGAAATCGG CAACGCGCCG
TGGGAGGCCT ACGACGCCTC GAGCCACAGC CTGACCCGGG CGATGAAGAC GCTGGGCCAC
GTTCCGAAAA CGCCGGCATA G
|
|---|
| Protein sequence | MAKRDPLSTY TEKRDFSISP EPVSGGQANE AARSFVVQKH WATRLHYDFR LELDGSMKSW
AVPKGPSLDP ADKRMAVHVE DHPIAYNAFE GTIPPRQYGA GKVIIWDKGT WVPLVDPRRG
YEEGHLKFEL HGHKLQGRWA LVRMKGKGEA KEPWLLIKEK DEHARPAADY SVVDALPDSV
ADKDDAAAVT KAAAPRRRAG ETPRPRKARA AKATEKAGAA AVEGAVKSAL PATLAPQLAT
LADKPPDDGD GWVYEVKFDG YRMLARIDKT VRLFTRNGND WSHRLAPLVK AIEAAGLRPG
WLDGEVVVPN AAGVPDFQAL QNAFDQARAD AIVYYVFDLP FYDGYDLRAA PLVARKALLA
GLLDTPHSDA LRLSESFDAA PRDILASACK MGLEGVIAKR RDAPYVSRRS TDWLKLKCTR
RQEFVIGGYT DPRGSRPGLG SLLLGVHDAR GELVYAGNVG TGFDHGTLGD LRKKLAAHAR
DTSPFVDATG IAGKPHWVDP KLVAEVSFGE WTKSGRIRHA VFEGLRLDKR AASVVREEPV
AAAAAAPRLP ADLKVSHPER VVDKASGTTK LALIAYYARV APLMMPHLKA RPVSLVRAPD
GVGGSLFFQK HVEASQMRGV KTLPRTLDPG HAPLIEVAAA EGLLTAAQMN VIEFHTWNAR
KTRIDKPDRM TFDLDPGEGV GWTTVQESAH LVREFLSQLG LASFLKTSGG KGLHIVVPLK
RLHDWDTVKD FSHAIVRHLA RTLPQRFAAK SGPKNRVGKI FIDYLRNGFG ATTVAAWSVR
ARPGLGVSVP LEWRELDALT SAAQWTVPNI DSRLEIGNAP WEAYDASSHS LTRAMKTLGH
VPKTPA
|
|---|
| |