Gene Tbd_2150 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTbd_2150 
Symbol 
ID3671931 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiobacillus denitrificans ATCC 25259 
KingdomBacteria 
Replicon accessionNC_007404 
Strand
Start bp2237069 
End bp2237608 
Gene Length540 bp 
Protein Length179 aa 
Translation table11 
GC content67% 
IMG OID637710854 
ProductTRAP transporter, small subunit 
Protein accessionYP_315908 
Protein GI74318168 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG4665] TRAP-type mannitol/chloroaromatic compound transport system, small permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.2063 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAACGC TGCTTGCGCT GGCCGGCCGG ATCGACGCAC TGACCGAACG CGTCGGGCGC 
ATCGTGATCT GGCTGGTTCT CGTGGCCACG CTCATTTCCG CCGGCAATGC GCTGGTGCGT
CACCTCGCCG GCGAGAGTTC GAACGCCTGG CTCGAAATCC AGTGGTATCT CTTCGGCGCA
ATGTTCATGC TCGGCGCCGG CTACACGCTC AAGCACAACG GCCACGTGCG CATCGACATC
TTCTACAACC GCTGCGGCGC GCGCGGCCGC GCCTGGATCG ATCTCGCCGG CGGCGGGCTG
TTCCTGCTGC CGATGGCCGT GCTGCTCGCC TGGCTGTCCT GGCCGATGTT CCACGAAGCC
TGGACGACGC GCGAATTGTC GCCCGACGCC GGCGGCCTCG TGCGCTGGCC GGTCAAGCTG
CTCTTGCCGC TCGGCTTCGC GCTGCTCGCG CTGCAGGGTA TCGCCGAAAT CATCAAGCGC
GTCGGCGTGC TGCGCGGCGA TCTCGTGATG CCCGCGGAAG CGCCCGACGA GGAGGTGTGA
 
Protein sequence
MKTLLALAGR IDALTERVGR IVIWLVLVAT LISAGNALVR HLAGESSNAW LEIQWYLFGA 
MFMLGAGYTL KHNGHVRIDI FYNRCGARGR AWIDLAGGGL FLLPMAVLLA WLSWPMFHEA
WTTRELSPDA GGLVRWPVKL LLPLGFALLA LQGIAEIIKR VGVLRGDLVM PAEAPDEEV