Gene Tbd_2079 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTbd_2079 
Symbol 
ID3672251 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiobacillus denitrificans ATCC 25259 
KingdomBacteria 
Replicon accessionNC_007404 
Strand
Start bp2171886 
End bp2173700 
Gene Length1815 bp 
Protein Length604 aa 
Translation table11 
GC content67% 
IMG OID637710782 
Productpreprotein translocase protein SecD 
Protein accessionYP_315837 
Protein GI74318097 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCGCT ACCCGCTCTG GAAATACCTG CTCATCGGCG TCACGCTGGT GGTCGCATTC 
CTCTATACGC TGCCGAATTT CTTCGGTGAG GTGCCCGCGG TCCAGGTTTC GCCCGTGCGC
ACGAGCGAAA CGGTCGACAC AGCCCTGCTC GGCCGCGTCG AGGCGCTCCT GAAGACGGCG
TCGCTGCCGA CGAGCGGCGT GGAACTCGCG GGCAACAGCA TCAAGGCGCG CTTCGCCAGC
ACCGACGTCC AGATCAAGGC CAAGGACGTG CTGCAGAACG GGCTCGGCGA GCGCTACACG
GTCGCGCTGA ATCTCGTCTC GGCCTCCCCC GCGTGGCTCT CGACGCTCAA CGCGCTGCCG
ATGTATCTGG GCCTCGACCT GCGCGGCGGC GTGCACTTCC TGCTCGAAGT CGACATGAAG
GCGGCACTCG AAAAAGCCGC TGTCCGCTAC CAGAACGACT TCCGCACCGA GTTGCGGGGG
GACAAGATCC GCTACAGCCG GATCAGCCGC GAGGGCAACG CGGTCGTCGT CCGTTTCGCG
ACGCGTGACC AGCGTGACGC GGCGGCGGAC AAGCTCGCTG CGGTCTTCAC CGACCTCGGC
TTCGCGGCCG AAGACCTCGA CGACGGCTTC CTGCTGACCG CGCGCCTCAA GCCCGAAGCC
GAGAAGCAGG TGCAGGAATT CGCGCTGCAG CAGAACATCA CCACGCTGAG AAACCGCGTC
AACGAGCTCG GGGTCGCCGA ACCCGTGATC CAGCAGCAGG GCGCCAATCG CGTCGTCGTG
CAGCTGCCGG GCGTACAGGA CACGGCCAAG GCCAAGGACA TCCTCGGCCG CACGGCGACG
CTCGAGGTGC GCATGGTCGA CGAACAGGCC GATCCGCTGC TCGTCGAACA GGGCCAGGCG
CCATTCGGCG CCGAGATCGT CGCCAGCCGC GAAGGCGGCA AGATCGCGGT CAAGAAGGAC
GTCGTGCTGA CCGGCGACTC GATCACGGAC GCCGCCCCCG GTTTCGACAG CACGAGCGCG
CAGGCGGCGG TGCACATCAA CCTCGACGGC AAGGGCGCGC GCATCTTCAA GGACGTGACG
CGTGAGAACG TCGGCAAGCG CATGGCGATC CTGCTGATCG AAAAAGGTAT CGCCGAGGCG
ATCACCGCGC CGGTCATCCG CGAGGAAATC GGCGGCGGCC GGGTCCAGAT CACGGGCATG
GAGACGGCCC AGGAAGCTTC CGACGTCGCG CTGCTGCTGC GTGCCGGCGC GCTCGCCGCG
CCGATGCAGA TCGTCGAGGA GCGCACGGTC GGACCGAGCA TGGGCGCCGA AAACATCGAA
AAAGGCTTCC ATTCCAACAT CTGGGGCTTC CTCGCTGTCG TCGCGTTCAT GACGATCTAT
TACCGCGTGT TCGGCCTCTT CTCGTCGGTC GCCCTGGCGA TCAACGGCTT CTTCCTGATC
GCGCTGCTGT CGATGCTGCA GGCGACGCTG ACGCTGCCCG GCATGGCCGC GATCGCGCTG
ACGCTCGGCA TGGCGATCGA CGCCAACGTG CTGATCAACG AGCGCATCCG CGAAGAGCTG
CGCAACGGCG CGACGCCGCA GGCCGCGATC CACGCCGGCT ACGACCGCGC CTGGGGCACG
ATTCTCGACT CCAACCTGAC GACACTGATC GCGGGCATCG CGCTCTTCTG GCTCGGCTCG
GGCCCGGTGC GCGGCTTCGC CGTCGTGCTG TGCCTCGGCA TCCTGACCTC GATGTTCAGC
GCGGTGACGG TGTCGCGGGC GATGGTCAAC CTCACCTACG GCCGCCAGCC CCGTCTGGCC
AAAGTTTCGA TCTAA
 
Protein sequence
MNRYPLWKYL LIGVTLVVAF LYTLPNFFGE VPAVQVSPVR TSETVDTALL GRVEALLKTA 
SLPTSGVELA GNSIKARFAS TDVQIKAKDV LQNGLGERYT VALNLVSASP AWLSTLNALP
MYLGLDLRGG VHFLLEVDMK AALEKAAVRY QNDFRTELRG DKIRYSRISR EGNAVVVRFA
TRDQRDAAAD KLAAVFTDLG FAAEDLDDGF LLTARLKPEA EKQVQEFALQ QNITTLRNRV
NELGVAEPVI QQQGANRVVV QLPGVQDTAK AKDILGRTAT LEVRMVDEQA DPLLVEQGQA
PFGAEIVASR EGGKIAVKKD VVLTGDSITD AAPGFDSTSA QAAVHINLDG KGARIFKDVT
RENVGKRMAI LLIEKGIAEA ITAPVIREEI GGGRVQITGM ETAQEASDVA LLLRAGALAA
PMQIVEERTV GPSMGAENIE KGFHSNIWGF LAVVAFMTIY YRVFGLFSSV ALAINGFFLI
ALLSMLQATL TLPGMAAIAL TLGMAIDANV LINERIREEL RNGATPQAAI HAGYDRAWGT
ILDSNLTTLI AGIALFWLGS GPVRGFAVVL CLGILTSMFS AVTVSRAMVN LTYGRQPRLA
KVSI