Gene Tbd_2075 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTbd_2075 
Symbol 
ID3672247 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiobacillus denitrificans ATCC 25259 
KingdomBacteria 
Replicon accessionNC_007404 
Strand
Start bp2168196 
End bp2169299 
Gene Length1104 bp 
Protein Length367 aa 
Translation table11 
GC content66% 
IMG OID637710778 
Productqueuine tRNA-ribosyltransferase 
Protein accessionYP_315833 
Protein GI74318093 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0343] Queuine/archaeosine tRNA-ribosyltransferase 
TIGRFAM ID[TIGR00430] tRNA-guanine transglycosylase, queuosine-34-forming
[TIGR00449] tRNA-guanine transglycosylases, various specificities 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.698983 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATTCG ACCTCCTCCG CACCGACGGC GGCGCACGGC GCGGCCAACT CCATCTCGCG 
CACGGGGTCG TGCAGACGCC GGTGTTCATG CCGGTCGGCA CCTACGGCAC GGTGAAGGCG
ATGTCGCCGA CGGAAATCGC CGACATCGGC TTCGAGATGC TGCTGTCCAA CACCTTCCAC
CTGTGGCTGC GGCCGGGGCT CGAGGTGATC GAGGCACACG GCGGGCTGCA CCGCTTCATG
GGCTGGGACA AGCCGATCCT CACCGACTCG GGGGGCTTTC AGGTGTTCAG CCTCGGCAAG
CTCAGAAAGA TCACCGAGGA GGGCGTGAAA TTCGCCTCGC CGACCAACGG CGACAAGCTC
TTTCTGACGC CCGAAACCTC GATGCAGATC CAGCGCACGC TCAATTCCGA CATCGTCATG
ATCTTCGACG AGTGCACGCC CTACCCCGCG ACGGAACGGC AGGCGGCCGA TTCGATGCGG
ATGAGCCTGA GATGGGCGGC GCGCTCGAAG GCGGCGCACG CGGGCAATCC GAACGCGCTG
TACGGGATCG TCCAGGGCGG CATGTACGAA GCCCTGCGCG ACGAGTCGGC GCGCGAACTG
ATCGGCATGG ACTTCGACGG CTATGCGATC GGCGGCCTCT CGGTCGGCGA GCCGAAGGAC
GACATGACGC GCATTCTCGC GCACACCGCG CCGCAGCTTC CCGCCGACAA GCCGCGCTAC
CTGATGGGCG TGGGGACGCC GTCCGATCTC GTTGCGGCGG TGGCGGCCGG CATCGACCAG
TTCGACTGCG TGCTGCCGAC GCGCAACGCG CGCCACGGCA TCCTGTTCAC GCGCCGCGGC
GAAATCCGCA TTCGCAATGC ACGCTGGAAG CTCGACACCG CGCCGATCGA CGAAGAATGC
GACTGCTACG CCTGCCGCCA TTTCACGCGC GCCTACGTGC ACCATCTGAT TCGCGCCGGC
GAGATCCTCG GCGCACGGCT CACCACCTTG CACAACCTGC ATTACTACCA CCGGCTGATG
GCCGAGGTGC GCGCGGCAAT CGACGCACAG CGCTTTTCGG AATTCGTCGC CCGCTTCCAC
GCGACGCAGG CGCTCGGATG GTGA
 
Protein sequence
MKFDLLRTDG GARRGQLHLA HGVVQTPVFM PVGTYGTVKA MSPTEIADIG FEMLLSNTFH 
LWLRPGLEVI EAHGGLHRFM GWDKPILTDS GGFQVFSLGK LRKITEEGVK FASPTNGDKL
FLTPETSMQI QRTLNSDIVM IFDECTPYPA TERQAADSMR MSLRWAARSK AAHAGNPNAL
YGIVQGGMYE ALRDESAREL IGMDFDGYAI GGLSVGEPKD DMTRILAHTA PQLPADKPRY
LMGVGTPSDL VAAVAAGIDQ FDCVLPTRNA RHGILFTRRG EIRIRNARWK LDTAPIDEEC
DCYACRHFTR AYVHHLIRAG EILGARLTTL HNLHYYHRLM AEVRAAIDAQ RFSEFVARFH
ATQALGW