| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_2025 |
|---|
| Symbol | |
|---|
| ID | 3672196 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiobacillus denitrificans ATCC 25259 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007404 |
|---|
| Strand | + |
|---|
| Start bp | 2116263 |
|---|
| End bp | 2117186 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637710727 |
|---|
| Product | histone deacetylase family protein |
|---|
| Protein accession | YP_315783 |
|---|
| Protein GI | 74318043 |
|---|
| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACACCG CCTACCTCAC CCACGCCGAT TGCCTGATGC ACGACATGGG CAGCTGGCAT
CCCGAAAGCC CGGCCCGCCT GCGCGCGATC GACGATCGCC TGCACGCCGC GCACCTGTTC
GATCATCTCG CGCATCACGA GGCACCGCGC GTGCAACGCG CGCAGTTGCT GCGCGTGCAC
GACGCGGCTT ACGTCGACTT CATTGAGGCG AGCTCGCCTG AACACGGCGT GCGCGCGCTC
GACGCCGACA CCAGCATGAA TCCGCACACG CTCTCCGCCG CGCTGCGGGC AGCCGGCGGC
GCCGCGATGG CGGTCGATCT CGTGATGGGA GACGACACCG CGAACGCCTT CGTCGCCTGC
CGCCCGCCCG GCCATCACGC GACGCGGAGG CGGGCGATGG GCTTCTGCAT CTTCAACAAC
GTCGCGGTCG CGGCGGCCCA GGCGCTCGAC GTCCACGGAC TCGAGCGTGT CGCGATCGTC
GACTTCGACG TCCATCACGG CAACGGGACG GAGGACATTT TTCGCGACGA CCCGCGCGTG
ATGCTGTGCT CGACCTTCCA GCATCCCTTC TATCCGTTCG CCGGCGCCGA CACGGCCAGC
GCGCACATCG TCAATGTGCC GCTGCCGGCC GGCACCGACG GCGCACGCTA CCGCGATGCC
TTCCGCGCGC AGATCGTGCC GCGCCTCGAC GCCTTCGCAC CGCAGATGCT GTTCTGCTCG
GCCGGCTTCG ACGGCCACCG CGAGGACGAC ATGGCCCAGT TCGGCCTGCT CGAAGCCGAT
TACGTCTGGA TCACCGAACA GGTCATGGCC GTCGCGGCGC GCCACGCGTG CGGGCGCATC
GTCTCGGTGC TGGAGGGGGG CTACGACCTG AGTTCGCTCG GCCGCAGCGC CGCGGCGCAC
ATCAAGACGC TCGCAGCGCT CTGA
|
|---|
| Protein sequence | MHTAYLTHAD CLMHDMGSWH PESPARLRAI DDRLHAAHLF DHLAHHEAPR VQRAQLLRVH
DAAYVDFIEA SSPEHGVRAL DADTSMNPHT LSAALRAAGG AAMAVDLVMG DDTANAFVAC
RPPGHHATRR RAMGFCIFNN VAVAAAQALD VHGLERVAIV DFDVHHGNGT EDIFRDDPRV
MLCSTFQHPF YPFAGADTAS AHIVNVPLPA GTDGARYRDA FRAQIVPRLD AFAPQMLFCS
AGFDGHREDD MAQFGLLEAD YVWITEQVMA VAARHACGRI VSVLEGGYDL SSLGRSAAAH
IKTLAAL
|
|---|
| |