| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1871 |
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| Symbol | |
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| ID | 3673981 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | - |
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| Start bp | 1967090 |
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| End bp | 1968934 |
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| Gene Length | 1845 bp |
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| Protein Length | 614 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637710570 |
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| Product | putative epimerase/dehydratase polysaccharide-related biosynthesis protein |
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| Protein accession | YP_315629 |
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| Protein GI | 74317889 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTTTA ATTCGCGCAC CCTCGTCATC ATCGTCTACG ACATCCTGGT GGCGGCGTTC
GCCTGGCTTG GCGCCTACTG GCTGCGCTTC AATCTCGACG TGCCGCCGGA GTTCGAGACC
GCCGCGCTCG CGACGCTGAT CTGGGTTGTG CCGCTGCAAG CCGTCGTATT CTGGCGCTTC
GGCCTGTATC GCGGTATCTG GCGCTTCGCG AGCTTGCCCG ACCTCAAGCG TATCGTGCTC
GCTGCGGGCC TAGCGGCGCT GCTGATCCCT GTTGCGTTGG TGCTCTTTCG CGTCCACGCC
ATCGTTCCGC GTTCGGTGCT GATTCTCGAC CCGCTGCTGC TGGTCATGGT GATGGGCGGC
AGCCGGCTCG CCTACCGCGC GTGGAAGGAG CACCGGCTCG CGAGCGTGCT GCGCCCCGAC
AGCAAACCTG TGCTGGTGGC GGGTGCGGGC TCGGCGGCCG ACTTCCTGCT CCGCGAACTC
GCGCGCAACC CGGCGGGCTT CCATGTCGTT GGCCTGCTCG ACGACAGCCG CGAGAAGCAG
GGGCGGCTCG TTCAGGGGGT GCCGGTTCTC GGCGTGCTCG ACGATGCCGC GGTGGTCGCG
AAGCGCTTGG GCGTCGACGA CGTCGTCCTT GCGCTGCCTT CAGCCGCGCA CGAGATCCGC
AAGCGCATCA CCGAGGCGTG CACCGGCGCA GGTCTCAACG TGATGACCGT TCCTTCGCTC
GAAGATCTGG TGGGCGGCCG CGTTTCGGTG TCGAGCCTGC GGCGCATCGA GCTCGACGAC
CTCCTCGGAC GCGATCCCGT GCAGCTCGAC GACAGCGGCC TGCATGGCTT GCTGACGGGG
CAGGTGGTCA TGGTGACCGG CGCGGGTGGC TCGATCGGCG CCGAGCTCTG CCGGCAGATC
GCGCGCTTCG CACCGGCCAA GCTCGTGCTG TTCGAGCAGT CCGAGCTCGC GCTGTACGCG
ATGGAGCAGG AGCTGCCGCG CCGCCATCCG GAACTGGCAG TCGTGCCGGT GATCGGCGAC
GCCAAGAACG CTGCGTGGGT CAATCGCGTC ATGGAGATGC ATCGGCCGGC GATCGTCTTC
CACGCCGCGG CGTATAAGCA CGTTCCGCTG ATGGAGAACG GCAACGCCTG GGAAGCGGTG
AAGAACAACG TGCTCGGCAC GCAGGTCGTC GCCGCGGCGG CGCAGGTGCA TGGCGTCGGA
AAGTTCGTGT TGATTTCGAC CGACAAGGCC GTCAATCCGA CCAACGTGAT GGGTGCGAGC
AAGCGCCTTG CCGAGATGGC GTGTCAGGCG ATGCAACAGC GCGCCGGCGA TGCCCCGACC
GGTACGCGTT TCGTATCGGT GCGGTTCGGC AACGTGCTCG GATCGTCGGG CAGCGTCATC
CCAAAGTTTC AGAAGCAGAT CGAAGCGGGC GGACCGGTGA CGGTCACGCA TCCCGAAATC
ACCCGCTACT TCATGTCGAT TCCGGAAGCC GCGCAGCTCG TCCTGCAGGC AGGCCTGATG
GGTAAAGGCG GCGAAATCTT CGTGCTCGAC ATGGGCGAGC CCGTGAAGAT CGCCGAGCTT
GCGAAGCTCA TGATCCGGCT GTCGGGCGCG GACGAAGCGC GCATACGCAT CGAGTACACC
GGCCTGCGCC CGGGCGAGAA GCTCTACGAG GAGCTGCTCG CGGACGACGA ATCGACGCTT
CCGACCCCGC ATCCGAAGCT GCGCGTCGCC AAGGCGCGGC CCGCAGACCC GGGCTGGCAT
GCCGAATGCC TCGACTGGCT CGCGTATCCG GATAGCTACG ACGAGGCCAC GGTCAAGCGC
CAGCTCAAGA CCTGGGTGCC GGAATACCAG CCGGAATCCG CGTGA
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| Protein sequence | MKFNSRTLVI IVYDILVAAF AWLGAYWLRF NLDVPPEFET AALATLIWVV PLQAVVFWRF
GLYRGIWRFA SLPDLKRIVL AAGLAALLIP VALVLFRVHA IVPRSVLILD PLLLVMVMGG
SRLAYRAWKE HRLASVLRPD SKPVLVAGAG SAADFLLREL ARNPAGFHVV GLLDDSREKQ
GRLVQGVPVL GVLDDAAVVA KRLGVDDVVL ALPSAAHEIR KRITEACTGA GLNVMTVPSL
EDLVGGRVSV SSLRRIELDD LLGRDPVQLD DSGLHGLLTG QVVMVTGAGG SIGAELCRQI
ARFAPAKLVL FEQSELALYA MEQELPRRHP ELAVVPVIGD AKNAAWVNRV MEMHRPAIVF
HAAAYKHVPL MENGNAWEAV KNNVLGTQVV AAAAQVHGVG KFVLISTDKA VNPTNVMGAS
KRLAEMACQA MQQRAGDAPT GTRFVSVRFG NVLGSSGSVI PKFQKQIEAG GPVTVTHPEI
TRYFMSIPEA AQLVLQAGLM GKGGEIFVLD MGEPVKIAEL AKLMIRLSGA DEARIRIEYT
GLRPGEKLYE ELLADDESTL PTPHPKLRVA KARPADPGWH AECLDWLAYP DSYDEATVKR
QLKTWVPEYQ PESA
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