| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1834 |
|---|
| Symbol | |
|---|
| ID | 3671499 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiobacillus denitrificans ATCC 25259 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007404 |
|---|
| Strand | + |
|---|
| Start bp | 1932987 |
|---|
| End bp | 1934177 |
|---|
| Gene Length | 1191 bp |
|---|
| Protein Length | 396 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637710533 |
|---|
| Product | putative protease |
|---|
| Protein accession | YP_315592 |
|---|
| Protein GI | 74317852 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family
[TIGR02038] periplasmic serine pepetdase DegS |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.308143 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATATAC GGAAATTCTG GTTGCTTTTT GCCCAGTCGG TGACGGTCGC ACTCGGCGCG
CTCGTCGTCG TCGCGCTCTT CAAACCCGAT TTGCTGCAAT GGCGTGCCCA GACCCCGAAT
CTCACGATCC AGCAGGCCCG TCCCCAAGGC GGCGGCACGG TCACCGTCGC GCCCAATGAG
TCCTTCGCGC TGGCGGCGCA AAAGGTCATT CCATCGGTGG TCAACGTGTT CACGCAGCAA
AAGGTCCGCA ACCCTGCGCA TCCTGCGATG CAGGATCCGA TTTTTCGCTA CTTCTTCGGT
GATCGGCTCG ACGCGCGGCC GCGCGAGGTG TCCAACCTCG GCTCGGGGGT CATCGTCACG
ACCAACGGCT ACATCCTGAC CAACCACCAC GTCGTCGATG CCGCGGACCA GATCGAGGTC
GCCCTTGCCG ACGGCAAGAC CGTGCCGGCG CGGGTGATCG GCGCGGACCC CGAGACCGAC
CTCGCCGTCC TCAAGATCGA TGCGGAAAAG CTGCCGGCGA TCACCTTCGC CAACGCCGAC
AGCCTCAAGG TCGGCGACTG GGTGCTCGCG GTCGGCAACC CCTTCGGCGT TGGCCAGACC
GTGACCGCGG GCATCGTGAG TGCACTCGGC CGGACCCGGT TGGGCATCAA TACTTTCGAG
AACTTCATTC AGACCGACGC GGCGATCAAC CCGGGCAACT CGGGCGGCGC GCTCGTCGAC
TCGGCGGGTA ACCTGGTCGG GGTGAACAGC GCGATCTACT CGCGCACGGG CGGCTCGCAA
GGCATCGGCT TCGCGATTCC GGTCAGCATC GCCCGTCAGG TGATGGAACA GATCATCAAG
TCCGGCAGCG TGACCCGCGG CTGGGTAGGG GTCGAGGTGC AGGACCTGAC GCCGGAGCTC
GCCGAGTCGT TCAACCTGCC CGACGTCAAC GGCGCCTTGA TCGCCGGGGT TCTCAAGGGC
GGGCCTGCCG ATACCGGCGG GGTGCGGCCC GGCGACATTC TGCTCGCGGT CAACGGCCGC
AGGGTGACCG ACTCGGCGTC CCTGCTCAAC CTGATCGCGG AACTCACGCC CGGCCAGAGC
GCGCGACTGA CCGTCGCCCG CAAGCAGCGC TCGCTCGATC TCAAGGTCGA GGTGGGACGG
CGGCCGCTGC AGCGCGCCCT GCCGATGCCG CCCGAGCCGG CGCTCGAATA A
|
|---|
| Protein sequence | MHIRKFWLLF AQSVTVALGA LVVVALFKPD LLQWRAQTPN LTIQQARPQG GGTVTVAPNE
SFALAAQKVI PSVVNVFTQQ KVRNPAHPAM QDPIFRYFFG DRLDARPREV SNLGSGVIVT
TNGYILTNHH VVDAADQIEV ALADGKTVPA RVIGADPETD LAVLKIDAEK LPAITFANAD
SLKVGDWVLA VGNPFGVGQT VTAGIVSALG RTRLGINTFE NFIQTDAAIN PGNSGGALVD
SAGNLVGVNS AIYSRTGGSQ GIGFAIPVSI ARQVMEQIIK SGSVTRGWVG VEVQDLTPEL
AESFNLPDVN GALIAGVLKG GPADTGGVRP GDILLAVNGR RVTDSASLLN LIAELTPGQS
ARLTVARKQR SLDLKVEVGR RPLQRALPMP PEPALE
|
|---|
| |