Gene Tbd_1834 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTbd_1834 
Symbol 
ID3671499 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiobacillus denitrificans ATCC 25259 
KingdomBacteria 
Replicon accessionNC_007404 
Strand
Start bp1932987 
End bp1934177 
Gene Length1191 bp 
Protein Length396 aa 
Translation table11 
GC content67% 
IMG OID637710533 
Productputative protease 
Protein accessionYP_315592 
Protein GI74317852 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID[TIGR02037] periplasmic serine protease, Do/DeqQ family
[TIGR02038] periplasmic serine pepetdase DegS 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.308143 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATATAC GGAAATTCTG GTTGCTTTTT GCCCAGTCGG TGACGGTCGC ACTCGGCGCG 
CTCGTCGTCG TCGCGCTCTT CAAACCCGAT TTGCTGCAAT GGCGTGCCCA GACCCCGAAT
CTCACGATCC AGCAGGCCCG TCCCCAAGGC GGCGGCACGG TCACCGTCGC GCCCAATGAG
TCCTTCGCGC TGGCGGCGCA AAAGGTCATT CCATCGGTGG TCAACGTGTT CACGCAGCAA
AAGGTCCGCA ACCCTGCGCA TCCTGCGATG CAGGATCCGA TTTTTCGCTA CTTCTTCGGT
GATCGGCTCG ACGCGCGGCC GCGCGAGGTG TCCAACCTCG GCTCGGGGGT CATCGTCACG
ACCAACGGCT ACATCCTGAC CAACCACCAC GTCGTCGATG CCGCGGACCA GATCGAGGTC
GCCCTTGCCG ACGGCAAGAC CGTGCCGGCG CGGGTGATCG GCGCGGACCC CGAGACCGAC
CTCGCCGTCC TCAAGATCGA TGCGGAAAAG CTGCCGGCGA TCACCTTCGC CAACGCCGAC
AGCCTCAAGG TCGGCGACTG GGTGCTCGCG GTCGGCAACC CCTTCGGCGT TGGCCAGACC
GTGACCGCGG GCATCGTGAG TGCACTCGGC CGGACCCGGT TGGGCATCAA TACTTTCGAG
AACTTCATTC AGACCGACGC GGCGATCAAC CCGGGCAACT CGGGCGGCGC GCTCGTCGAC
TCGGCGGGTA ACCTGGTCGG GGTGAACAGC GCGATCTACT CGCGCACGGG CGGCTCGCAA
GGCATCGGCT TCGCGATTCC GGTCAGCATC GCCCGTCAGG TGATGGAACA GATCATCAAG
TCCGGCAGCG TGACCCGCGG CTGGGTAGGG GTCGAGGTGC AGGACCTGAC GCCGGAGCTC
GCCGAGTCGT TCAACCTGCC CGACGTCAAC GGCGCCTTGA TCGCCGGGGT TCTCAAGGGC
GGGCCTGCCG ATACCGGCGG GGTGCGGCCC GGCGACATTC TGCTCGCGGT CAACGGCCGC
AGGGTGACCG ACTCGGCGTC CCTGCTCAAC CTGATCGCGG AACTCACGCC CGGCCAGAGC
GCGCGACTGA CCGTCGCCCG CAAGCAGCGC TCGCTCGATC TCAAGGTCGA GGTGGGACGG
CGGCCGCTGC AGCGCGCCCT GCCGATGCCG CCCGAGCCGG CGCTCGAATA A
 
Protein sequence
MHIRKFWLLF AQSVTVALGA LVVVALFKPD LLQWRAQTPN LTIQQARPQG GGTVTVAPNE 
SFALAAQKVI PSVVNVFTQQ KVRNPAHPAM QDPIFRYFFG DRLDARPREV SNLGSGVIVT
TNGYILTNHH VVDAADQIEV ALADGKTVPA RVIGADPETD LAVLKIDAEK LPAITFANAD
SLKVGDWVLA VGNPFGVGQT VTAGIVSALG RTRLGINTFE NFIQTDAAIN PGNSGGALVD
SAGNLVGVNS AIYSRTGGSQ GIGFAIPVSI ARQVMEQIIK SGSVTRGWVG VEVQDLTPEL
AESFNLPDVN GALIAGVLKG GPADTGGVRP GDILLAVNGR RVTDSASLLN LIAELTPGQS
ARLTVARKQR SLDLKVEVGR RPLQRALPMP PEPALE