| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1820 |
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| Symbol | |
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| ID | 3671484 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | - |
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| Start bp | 1919351 |
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| End bp | 1922140 |
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| Gene Length | 2790 bp |
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| Protein Length | 929 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637710518 |
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| Product | TrwC protein |
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| Protein accession | YP_315578 |
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| Protein GI | 74317838 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
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| TIGRFAM ID | [TIGR02686] conjugative relaxase domain, TrwC/TraI family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.550387 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCTGCA CAGTCAGCGC TATCAAAACC GCCGGCGTGG CGGCTGAGTA CTACGCTCAG
ACAGACGACT ATTATCGCGA TCGGGGGCAT GCCCCGACTG CATGGCAAGG CAAAGGCGCT
GAGGCGCTGG GCCTGCGGGG CGAAGTCACC CCCGCGCAAG CTGAGGCAAT CCTGAACGGC
ATTCTGCCGA ACGGTGAGCG GGTAGGCGGC GGCGACCACC GCCCCGGCTG GGATGCTACG
TTCTCAGCCC CGAAAAGTGT CAGCGTCGCG GCCTATGTAC GCGGCGACGA CCGCCTGATT
GCAGCGCATG ATCGAGCGGT GAACGCTGCG ATCCAATACC TGGAGCGAGA GGTGGCGGCC
ACCCGCATCC GCGAAGAAGG GGAGGTCCGC ACGGAAGCGA CGGGCAACCT GGTCGCCGCG
ACATATAGAC ATGACGTGTC GCGCGAGGGT GAGCCGGATC TACACACCCA CAGCGTGATC
GCCAATATCA CGCAGAGCGC AGACGGACAG TGGCGGTCGC TGGAGTCCCG CCCGTTGTAC
CGCCTGCAGA CTGACGCGGG AGCGGTGTAT CGGGCGGCCC TTGCTCGTGA ATGCGAGCGC
CTGGGGTACG CGACCGAGCG CACCCGAGCC GGCGAGCATC CTAGTTTTGA GTTGCGCCAG
GTGTCACAGG CTGAGCGCGA CATGTGGAGC ACCAGGTCGC GGCAGGTGGA GGCCGAGCTG
GCAAAAATGG GGCTCTCGCG GGAGACCGCG ACCGCCGAGC AAAAACAGGC CGCTGCGCTG
GCGACGCGCC AGGCGAAGGG CAACATAGGC CGCGATAACC TTTTATCCAA TTGGCGAGAG
CAGTCGCGGC AGGCCGGACA CGAGATGCCA GCACTGCCGC AGGCCCAGGA GATCGATGCG
GGGGAGTATC GGCGTCGTGC CGAGGCGGCA GTACGGCAGG CGGTCGAGCA TCTATCGGAG
CGTGAGAGCA GGTACACCGA GCGCCAGATC GTCACAGAAG CACGGAAGCT CGGGATGGGC
GGCATCGACG ACCAGGACAT CCGGGCTGCC GTCGCCGACT TGCACCGGCG CGGCGAACTG
GTGGAGACGC AGACCCGGCA GCACGACGCG ATCACCGGCC AGCGGCTGGA GCAGGCCGGC
TACACGACGC GCGAGGCGCA GCGGATCGAG CGGCACATGC TCGACACGGC GAGCCGGGCC
GCTGGTGCAA TCAAACCAGC GATGAGCATC GAGGCGGCCG ACGCGGCGAT TTCGGCGCAG
GTGGCAAAAA CCGGGCACGC ATTTAACACC GCTCAGGTCG AGGCCACCAA GGCGCTGCTG
ACCGGCACGG ATCGCATCAC GCTGGTTCAA GGTTACGCGG GCACAGCCAA GACCACCAGC
GTGCTCGCCG TCTCATCTGC CGCGCTGCAA CAGCAGGGTT ATGGGGTCAT CGCTTTGGCC
CCGACGCACT CGTCTGCGAA AACGTTGGGC GATGCGATTG GCGCCGAGTC GCAAACTGTC
GCCAAATTCC TCAACAGCCG ACCGGAGGTT AGCAGCCAGC CACGCATATA TATGGTGGAC
GAGGCATCGA TGCTGTCCGC CCGCGACATG GACAAGCTGT TATCCCGCAC CCAAGGGGGC
CGGGTTGTCA TGGTCGGCGA CGTGAAACAG CTCGGCAGCG TCGAGGCGGG CGCTGCGTTT
CGTCAATTGC AAACGGACGG CGATCTCAAA ACGCAGGTGC TCGATTATAT CGTCCGCCAG
CGTAGCGATG AGTTGCGGGC GGCGGTCTAC GACGCGATAC GCGGCGACGT TCAGTCAGCG
CTCAGCAAAA TCGACGTACG CGAGCTGGAC ACGCGAGAGA GCCGCGTCGG TGCGATCGCC
GCCGACTATG CCGGCATGAG CCGCGACGAC CGCGATCGCA CAATCATCAT TGCCCCCGGC
AGGGACGACC GGCGGCAGAT CAACGATGCC GTGCGTGAGC AGTTGGCGGC GCGGGGCGAG
TTGGGTGGCT CGGTGACGAT CCAGGCGCTC GACTCGCGTG ACATGACAGC GGTAGAGAGT
CGGCGGGCCG GCAGCTATGC GGTTGGCCAC CAGGTGCAGG CCGGGCGGGA CTATGCGTCG
CTCGGCCTCA AACGCGGCGA TTTTGCTCGC GTGGTTGCGG TGGACGTCGA TTGCAACCGC
ATCACGCTCG AAACCGTCAC CGGACACCAG AAAGAGATTG ACCCGTCACG GGTGACGAAG
CTCGCCGCGT TTGAGCAGCG CGACATGGCT GTGGCGGTGG GCGACAAGCT GGTCAACCGT
GTCAACACCC AGACGCTTAA AAACGGCACC CCGCTGACGG TAGAGAAAAT CGCCGAGGGC
CAGATCCATG TCCGCGATGC CGCCGGCAAG CTGCACCGGC TCGACGCCGG AGCGATGCAC
CGGCTCGACC ACGGCTACGC GCAGACTGGC CACGAATCCC AGGGCCGCAC GTGTACGCGC
GTACTAATAC ACGCGGAGAG CGCGCGGACG AATCTGCAAA CCCAGCAAAA CATGTACGTC
GCGCTCAGCC GCGCGACTGA TGACGCACGG GTCTACACCG ACAACCGCGG GGCCCTGGCT
GCGCAGATCG AGCGTGAGTC GGGGCAGAAA GAGACCGCGC TGGCGGAGCC CGAGCCGCCC
CCGCCGGCCC TGGAGCTGCC GATGCCCGGC CCTGCGATCG AGCCAGCGCC GTGGGAGACG
TCGGAGCCGG CGATCGATGT CCGCACCCCC GACATATTAG AGATAGAGAC GCCGCCACCC
GCGGTGCCCG AGTTTGATTT TGATCGTTAG
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| Protein sequence | MVCTVSAIKT AGVAAEYYAQ TDDYYRDRGH APTAWQGKGA EALGLRGEVT PAQAEAILNG
ILPNGERVGG GDHRPGWDAT FSAPKSVSVA AYVRGDDRLI AAHDRAVNAA IQYLEREVAA
TRIREEGEVR TEATGNLVAA TYRHDVSREG EPDLHTHSVI ANITQSADGQ WRSLESRPLY
RLQTDAGAVY RAALARECER LGYATERTRA GEHPSFELRQ VSQAERDMWS TRSRQVEAEL
AKMGLSRETA TAEQKQAAAL ATRQAKGNIG RDNLLSNWRE QSRQAGHEMP ALPQAQEIDA
GEYRRRAEAA VRQAVEHLSE RESRYTERQI VTEARKLGMG GIDDQDIRAA VADLHRRGEL
VETQTRQHDA ITGQRLEQAG YTTREAQRIE RHMLDTASRA AGAIKPAMSI EAADAAISAQ
VAKTGHAFNT AQVEATKALL TGTDRITLVQ GYAGTAKTTS VLAVSSAALQ QQGYGVIALA
PTHSSAKTLG DAIGAESQTV AKFLNSRPEV SSQPRIYMVD EASMLSARDM DKLLSRTQGG
RVVMVGDVKQ LGSVEAGAAF RQLQTDGDLK TQVLDYIVRQ RSDELRAAVY DAIRGDVQSA
LSKIDVRELD TRESRVGAIA ADYAGMSRDD RDRTIIIAPG RDDRRQINDA VREQLAARGE
LGGSVTIQAL DSRDMTAVES RRAGSYAVGH QVQAGRDYAS LGLKRGDFAR VVAVDVDCNR
ITLETVTGHQ KEIDPSRVTK LAAFEQRDMA VAVGDKLVNR VNTQTLKNGT PLTVEKIAEG
QIHVRDAAGK LHRLDAGAMH RLDHGYAQTG HESQGRTCTR VLIHAESART NLQTQQNMYV
ALSRATDDAR VYTDNRGALA AQIERESGQK ETALAEPEPP PPALELPMPG PAIEPAPWET
SEPAIDVRTP DILEIETPPP AVPEFDFDR
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