| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1808 |
|---|
| Symbol | |
|---|
| ID | 3671472 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiobacillus denitrificans ATCC 25259 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007404 |
|---|
| Strand | + |
|---|
| Start bp | 1911396 |
|---|
| End bp | 1912454 |
|---|
| Gene Length | 1059 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637710506 |
|---|
| Product | phage integrase family site specific recombinase |
|---|
| Protein accession | YP_315566 |
|---|
| Protein GI | 74317826 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.595703 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACAA TCCGTAAAAG AGGCGAATTG CAGTGGCAGG CCATCGTCAA ACGGAAAGGC
TACCCTCTGC AATCCAAAAC CTGGAACACT CGCAAAGAGG CCGAAGCTTG GGCGCGGCAG
ATTGAAAGCG AGATGGATCG CGGTGTCTTC GTCAGCCGCG CCGAGGTGGA GCGGACGACG
CTGCAGGATC TGATCGGGCG GTATCGCATC GAAGTGCTGC CAAACAAGCG TGGCAAGCAC
TTCGGCCCGG CCCTGAGGGT GCTGGAACAG CACCTGGGGA AATATTCGCT CGCCGCGCTG
TCGCCGAAGC TCATCGCCGG CTTCCGTGAC AAGAGAACGA AAGCCGGTCT GTCAGCATCG
ACGGTCAAGA AAGAAATCAA TCTGCTCTCG AAGTTGATCG ACCTGGCCGG TAAAGAATGG
GGGGTCGCGT TGCCCGCGAA CCCCTGCGCG ATGGTCTCCA GGCCGGTCGA GAAAAACGCC
AGGGACCGCC GCCTGCAGCC GGAGGAAGAA AAGTATCTGC TGACCGCTTG CGAACAGCAC
GTCGCGCTCC TCTCCCGCTT TGCGCTTGAG ACCGCCGCGC GCTTGGGCGA GCTGCTTGCG
CTACGCTGGG CAGACGTTGA CACGACGAAG CGGGTGATGG TGATTCGGGG CATAGACGAG
CGCGGCACAA AGTCGGGCGA TGCGCTCCGT GCTGTCCCTT TGTCGCCTGC CGCGGTTTCC
GTGCTGGATG AACTGAAGAA GCTACCGCGA GGGATCGACG GCCGAGTGTT TTACTGGTGG
AAAGCGTCCG ACAGTTTTAG CAAGACGTGG GGGCGCGCAT TGACGCGGGC GCACGCCTCG
TACATCGCCG ACTGCGAGAA GGCCGGGGGG GAGCCGGACC AAGCATTTCT GATAGACCTG
AGGTTCCACG ATCTACGCCA TGAGGCAACG TCACGCCTGT TCGAAAAAGG CGTGTTCGAC
AGCATGGAGG TCGCCAGCAT CACGGGGCAC AAGACCCTCG CCATGCTCAA GCGGTATACG
CACCTGCGGG CTGAAGATTT GGCGAAGAAG CTGGGCTAG
|
|---|
| Protein sequence | MATIRKRGEL QWQAIVKRKG YPLQSKTWNT RKEAEAWARQ IESEMDRGVF VSRAEVERTT
LQDLIGRYRI EVLPNKRGKH FGPALRVLEQ HLGKYSLAAL SPKLIAGFRD KRTKAGLSAS
TVKKEINLLS KLIDLAGKEW GVALPANPCA MVSRPVEKNA RDRRLQPEEE KYLLTACEQH
VALLSRFALE TAARLGELLA LRWADVDTTK RVMVIRGIDE RGTKSGDALR AVPLSPAAVS
VLDELKKLPR GIDGRVFYWW KASDSFSKTW GRALTRAHAS YIADCEKAGG EPDQAFLIDL
RFHDLRHEAT SRLFEKGVFD SMEVASITGH KTLAMLKRYT HLRAEDLAKK LG
|
|---|
| |