Gene Tbd_1795 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTbd_1795 
Symbol 
ID3671459 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiobacillus denitrificans ATCC 25259 
KingdomBacteria 
Replicon accessionNC_007404 
Strand
Start bp1896480 
End bp1897274 
Gene Length795 bp 
Protein Length264 aa 
Translation table11 
GC content62% 
IMG OID637710493 
Productpolysaccharide export outer membrane protein 
Protein accessionYP_315553 
Protein GI74317813 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1596] Periplasmic protein involved in polysaccharide export 
TIGRFAM ID[TIGR03028] polysaccharide export protein EpsE 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGAAGT TGTGGCGTAC CGTTTGTGCG ATGTGTTTGA TGTTGCTGGC ACCGCCGGCG 
CTGAGCGGGG ATACCGATTA CCGCATGGGT GTCGGTGATG TGGTGAGGAT CACTGTATAT
GGGCAGCCCG ACCTCACCAC CGATGCTCGG GTGAGCGCAA AGGGCAACAT CAGTTTTCCC
TTGATCGGCG AGGTTAAGCT CGCAGGTACA ACACCCGCTG AAGGGGAGCG GGAGATTGCC
AGCCGCCTCA GCAAAGGCGG GTTCGTCGTG CAGCCCTTCG TCACGCTGAA CGTCGTGCAG
TACCGCGGCC AGCAGGTCTC CGTTTTGGGG CGGGTGAACC GCCCGGGCAA ATATCCCCTG
GAGAAAGCGG GCCGCGTCAG CGACGCGCTC GCCTTGGCAG GCGGCATCCT CCCCGACGGC
GCCGACGTCA TCACGCTGGT TCGTGAGCGC GACGGCAAGA TCGAATATCG CCAGATCGAT
GTGCTTGCGT TGTTTAACCC AGGTGGAGAC CCCAACAATG TCGTGGTTCA GGACGGCGAC
ATCATCAACG TCGCGCGCCA GCCTATGTTC TACATCTACG GCGAAGTGCA GCGACCCGGT
GCTTTCAGGC TCGAGCAGAA CATGACGCTC ATGCAGGCTC TCTCGATGGG CGGCGGCCTC
ACGCCGCGCG GGACGCAGCG CGGGATCCGG ATCATGCGGC GAGACGACAA GGGAGCGGTG
CGAGAAGTCA GCGGGGAACT GGGTGACCTC GTGAAACCCG ACGACGTCAT CTACGTCAAG
GAAAGCCTGT TCTAA
 
Protein sequence
MMKLWRTVCA MCLMLLAPPA LSGDTDYRMG VGDVVRITVY GQPDLTTDAR VSAKGNISFP 
LIGEVKLAGT TPAEGEREIA SRLSKGGFVV QPFVTLNVVQ YRGQQVSVLG RVNRPGKYPL
EKAGRVSDAL ALAGGILPDG ADVITLVRER DGKIEYRQID VLALFNPGGD PNNVVVQDGD
IINVARQPMF YIYGEVQRPG AFRLEQNMTL MQALSMGGGL TPRGTQRGIR IMRRDDKGAV
REVSGELGDL VKPDDVIYVK ESLF