Gene Tbd_1662 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTbd_1662 
Symbol 
ID3673047 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiobacillus denitrificans ATCC 25259 
KingdomBacteria 
Replicon accessionNC_007404 
Strand
Start bp1746795 
End bp1747493 
Gene Length699 bp 
Protein Length232 aa 
Translation table11 
GC content66% 
IMG OID637710349 
ProductDNA polymerase III, epsilon subunit 
Protein accessionYP_315420 
Protein GI74317680 
COG category[L] Replication, recombination and repair 
COG ID[COG0847] DNA polymerase III, epsilon subunit and related 3'-5' exonucleases 
TIGRFAM ID[TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family
[TIGR01406] DNA polymerase III, epsilon subunit, Proteobacterial 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.862026 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGTCAAA TCATCCTCGA TACGGAAACG ACCGGGCTCG ACCCGGCCCA GGGCCATCGC 
ATCATCGAAG TCGCGGCGGT GGAAATGGTC AACCGCCGGC TGACCGGCAA TCACCTCCAT
CGCTACGTCA ATCCGGACCG TGACATCGAC GCCGGAGCCA TGCAGGTGCA CGGCATCACG
CCGGAGTTTC TGCAGGACAA GCCGCGTTTC GGCGATATCG CGCGCGAGTT CGTCGATTTC
ATCGACGGCG CCGAGCTGAT CATCCACAAC GCACCGTTCG ACGTTGGCTT TCTCAACATG
GAGTTGCGCC TGCTCGGCAT GCCGCTCCTG GCGACCTGCT GCGGCGGGGT GACCGACACG
CTGGCGATGG CCAAGGCGCT GCACCCCGGC CAGCGCAATA ACCTCGACGC ACTTTGCAAA
CGCTACGCCG TCGACAATAC CGCGCGCACG CTGCACGGCG CGCTGCTCGA CTGCGAGTTG
CTGGCCGCGG TCTATCTGGC GCTGACCCGC GGCCAGGAAA GCCTTTCGAT CGGACTGGAA
ATACCGCGTT CGGAGAGCGG CCGTGCGGCG GACCGGCCGC GGCCGGCAGC GATTTTGTTG
CCGGCGGACG CGGAGGAGGA GGCAGCGCAT GCGGCGCTGC TCGCGGCGAT CGCGAAGGAG
AGCAAGGGCG AATGCCTGTG GGGCGTAGAG GCGCCTTGA
 
Protein sequence
MRQIILDTET TGLDPAQGHR IIEVAAVEMV NRRLTGNHLH RYVNPDRDID AGAMQVHGIT 
PEFLQDKPRF GDIAREFVDF IDGAELIIHN APFDVGFLNM ELRLLGMPLL ATCCGGVTDT
LAMAKALHPG QRNNLDALCK RYAVDNTART LHGALLDCEL LAAVYLALTR GQESLSIGLE
IPRSESGRAA DRPRPAAILL PADAEEEAAH AALLAAIAKE SKGECLWGVE AP