| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1660 |
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| Symbol | |
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| ID | 3673045 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | - |
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| Start bp | 1743752 |
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| End bp | 1745848 |
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| Gene Length | 2097 bp |
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| Protein Length | 698 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637710347 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_315418 |
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| Protein GI | 74317678 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.771152 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCTCG CACTCGGGAT ACGCGGGCGC GTGATCGGCC TGACGCTCGT GCCGGTGGCG
ATCATCGGCG TTCTTCTGCT GTTCCAGCTC ATCAGCGGAA AAATCGACGA CCTCGATCAG
TCGCTGCGCA CGCGTGCGGT CGCCATCGCC CGGCAGCTTG CGCCGGCGGC CGAATACGGC
GTGGCGTCGG GCAACATCGA CGTGCTGCAG ACGCTGCTCG AAAAAGCTGC GGTCGAACCC
GACGTGCGGG GGGTCGCGGT GTTCGCCGAT GACGGCCAGT GGCTGGCACA GGTCGGGCTG
GGCAACTGGG ATGACCCGTC GCGCCGCCAC TTGTCCACGG ACCATATCCA GCAGATCGAA
TACCCGGATC GCCTCGTCTA CTACGCGCCG ATCACGCGGA CCGAGGTTGC GGTCGACGAC
TTCAGTTCGG TCGGCGGACG GGCGGGCGCT GCGACCCGTC CGACGCGGCT GCTCGGCTGG
GTCGGTCTCG AGGTATCGCG GAGCGCGACG GTCAAGAGTC AACGCGATGC GATCGTACGC
AGTCTGCTGA TCCTGCTCGC CGGCCTCAGC GTCAGCTTCT ATCTCGCGTG GCGCATCGGA
CGGCAGATCA CGCGGCCGAT CCTCGCGCTC ACGCACACCG TGAGCCGGAT CGGCGAGGGG
CACCTCGACG AGCGCGTCGT CCAGAGCGGG CAGGCCGAAC TCGGCGTCCT GCAACGCGGC
GTCAACAACA TGGCGGCCCA CCTGCAGGCG ATGCACGGCC AGATGCAGGC CAAGATCGAT
CAGGCCACCG CGCGCCTGGT CTATCAGGCG AGCCACGACG CGCTGACCGG CTTGATCAAT
CGCCGCGAGT TCGAGCAGCG GCTCGAACGC GCGCGCATGT CGGCGCTGGA ACAGGGACGG
GAACACGCAC TGTGCTACAT GGACCTCGAC CAGTTCAAGG TGATCAACGA CTCGTGCGGC
CACGCCGCCG GCGACGAACT GTTGCGCCAA CTCGCCCTGC TGCTCAAGGG CAAGCTGCGG
GAGCGTGACA CGCTCGCGCG TCTCGGCGGC GACGAATTCG CGCTCCTGCT GGAAAACTGC
AGCATCGACG ACGCGCTCGA AGTCGCCGAC GCATTCCGCT CTGAGGTGCA GCGCTTCCGC
TTCAAATGGG GCGACCGCAT CTTTGCGGTC GGCATGAGCG TCGGCATGGT CGCGATCGAC
GCCGACAGTG GCACTGCCGC CGGCCTCATG TCGGCGGCCG ACGCCGCGTG CTACGTGGCG
AAGGATCGCG GGCGCAATCA GATCCACCTT TACGAGAGCC GCGACTCAGA CCTGGTCCGC
CATCGCGGCG AGATGCAGTG GGTCACGCGC ATCCAGCGCG CGCTCGAGGA AAATCGCCTG
AGCCTCTCCT GGCAGGAAAT CCGCCGCACC GACGCAGCAC CCGAGCCGGG CACGCGCCAC
GTCGAGCTGT TGTTGCGAAT GATCGACGAC GACGGCGGCG AGATCCTGCC GATGGCCTTC
ATTCCTGCGG CGGAACGCTA CTCGATCATG CCGGCGCTCG ACGCCTGGGT GGTCGAGGAG
ACGCTACGGC TGTGCAAGCG CTACCTCAAA TCGACCTGCG AGGTGCATTG CCTGTTTGCG
GTGAACCTGT CGGGCGCATC GCTGAAGGAC CCCACCTTCC GCAAGACACT GCTCGCGCAA
CTGCAGCAGA ATCCGGAACT GGGCCCGCAC CTGTGCTTCG AAATCACCGA AACCGCTGCG
ATCGGCAACC TCGGCGTCGT CAATGGTTTC ATCGACGCGA TGCGTGGCTT CGGCTGCAGC
TTCGCGCTCG ACGACTTCGG CAGCGGCCTG TCGTCGTTCA CCTACCTTAA AAACCTGCGC
GTCGACTACC TCAAGATCGA TGGTGCCTTC GTGCGTGACA TCGCGACCAA CGCGATCGAC
CGCTCGATGG TCGAAGCGAT CCACCGCATC GGCCACCAGA TGGGGCTGCA GACGGTCGCA
GAATACGTCG AGTCGGAGGA GATTCTGAGT CTGTTGCGCG AGATCGGCGT CGATTACGCA
CAGGGCAGCG CCGTGCGCCG CCCTGAGCCG ATCGACACCT TGTGCGCGCG GGATTGA
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| Protein sequence | MALALGIRGR VIGLTLVPVA IIGVLLLFQL ISGKIDDLDQ SLRTRAVAIA RQLAPAAEYG
VASGNIDVLQ TLLEKAAVEP DVRGVAVFAD DGQWLAQVGL GNWDDPSRRH LSTDHIQQIE
YPDRLVYYAP ITRTEVAVDD FSSVGGRAGA ATRPTRLLGW VGLEVSRSAT VKSQRDAIVR
SLLILLAGLS VSFYLAWRIG RQITRPILAL THTVSRIGEG HLDERVVQSG QAELGVLQRG
VNNMAAHLQA MHGQMQAKID QATARLVYQA SHDALTGLIN RREFEQRLER ARMSALEQGR
EHALCYMDLD QFKVINDSCG HAAGDELLRQ LALLLKGKLR ERDTLARLGG DEFALLLENC
SIDDALEVAD AFRSEVQRFR FKWGDRIFAV GMSVGMVAID ADSGTAAGLM SAADAACYVA
KDRGRNQIHL YESRDSDLVR HRGEMQWVTR IQRALEENRL SLSWQEIRRT DAAPEPGTRH
VELLLRMIDD DGGEILPMAF IPAAERYSIM PALDAWVVEE TLRLCKRYLK STCEVHCLFA
VNLSGASLKD PTFRKTLLAQ LQQNPELGPH LCFEITETAA IGNLGVVNGF IDAMRGFGCS
FALDDFGSGL SSFTYLKNLR VDYLKIDGAF VRDIATNAID RSMVEAIHRI GHQMGLQTVA
EYVESEEILS LLREIGVDYA QGSAVRRPEP IDTLCARD
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