| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1656 |
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| Symbol | |
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| ID | 3673041 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | + |
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| Start bp | 1738365 |
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| End bp | 1741805 |
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| Gene Length | 3441 bp |
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| Protein Length | 1146 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637710343 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_315414 |
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| Protein GI | 74317674 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.221559 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCTTC TGTTCCACGA CCCTGCGCTC GCCGTCCGCA GAGCATCCGG CCTCGCCGGC
GCGGCCGACG CCCTGTACCT GGCGGAGGCG GCGCGCAGCG TCGCGCCGCT CGTCATCGTG
TGTGCAAGCG CCTGGGACGC GAACCGGCTG ACCGAGGAAC TGCGCTGGTT CGACCCCGCG
CTGCGGGTAT GCGCCTTCCC CGACTGGGAG ACGCTGCCCT ACGACAATTT CTCGCCCCAC
CCCGACCTGC TCTCGGAGCG GCTCGCGACG CTCTATCAGA TTTCGCGCGG CGAGTTCGAC
CTTGCAGTCG TCGCGCTGTC GACGGCCTTG CACCGGCTGG CGCCGCCGTC TTTTCTCGCC
GCCCACACCT TTTTCCTCAA GCAGAAGGAC CGCCTCGATG AAGCGGCCTT CCGCGCGCAG
ATGACGCTCG GCGGCTACAG CAACGTGAAC CAGGTGTTCG CGCCGGGCGA ATTCTCGGTC
CGCGGCGGAC TGATCGACCT CTTCCCGATG GGCAGCGCGG TGCCCTACCG CATCGACCTC
TTCGACAACG AGATCGAAAC CCTGCGCGCG TTCGACGTCG ACACCCAGCG CAGCATCTAC
CCGGTGAACG AGGTGCGCCT CTTGCCGGCG CGCGAATTTC CGCTCGACGA GGCCGGCGTC
ACGCGCTTCC GGCAGAATTT CCGCGAACGC TTCGAAGGCG ACCCCTCGAA GTCCAAGCTG
TACCAGGACG TCAGCAACGG CCTCGCGCCG GCCGGCATCG AATACTACTT GCCGCTGTTT
TTCGACGCGA CCGCGACCCT CTTCGACTAC CTGCCGCAGC CCACGCGGCT GGTCGCCCAC
GGCGCGCTCG ACGCGGCCGG TCAGGCGTTC TGGAGCGAGG CGCAAGGTCG CCATCGCCTG
CTCGCAGGCG ACAAGGACAG GCCGCTGCTG CCGCCTGCCG ATCTGTTCCT TGCGACCGAC
GCCTTCTTCA GCCGCGCGAA AAGCTACGAA CGGTTCGACG TCGCGCAGGC CGGCGATGGC
CTGGCACGTC CGCTTCCCCC GATCTCGGTC GACCGCCGCG AGGCACATCC GGTCGCCAAG
CTGCGCAGCT TCATCGACGG CTTCCGCGGC AAGACGCTGA TCGTCGCGCC GTCGGCCGGA
CGACGCGAAA CCCTGCACGA ATACCTCGCC GAGCACGGTC TCGACGCCAC GCCCTGCGAC
GGATGGGCCG GCTGCGAGGC TGGGCGCGAA AGGATTCTGC TGACCCATGG CCCGCTTGCC
GAAGGCTTCG TGACGCACGA TGAGGCGCTC GCCGTCATCA CCGAAACCGA GCTCTACGCG
ATCCCGCCGA AGACCCGCCG CGCCCGCGAA GCGCGGGCCA CGCAGATCGA CAGCCTGTTG
CGCGACCTGT CGGAACTGAA GCCCGGCGAT CCTGTCGTCC ACGCGCAGTA CGGTGTCGGC
CAGTACCTCG GCCTGGCGAC CATGGACCTC GGCGACGGCG ACACCGAGTT CCTGCAGCTC
GAATACGCCA AGGGCGACAA GCTCTACGTC CCGGTCGCCA ACCTGCATCT GATCTCGCGC
TATTCCGGTG CGAGCGAAGG CGAGGTCCCG CTCCACAGGC TCGGCACCGA CCAGTGGGAG
AAGGCTCGCC GCCGCGCCAT GCAGGCTGCG CGCGACACCG CCGCCGAGCT GCTGAATCTG
TACGCCCTGC GCGCCGCGCG CGAAGGCCAC GCGTTCAGTT TTTCGCTGCA CGACTACGAG
GCCTTCGCCG AGGGCTTCGG CTACGAGGAG ACCCCCGACC AGGCCGCGGC GATCGCGGCC
GTGATGGCCG ACATGCAGTC GGGCAAGCCG ATGGACCGCC TCGTGTGCGG CGACGTCGGC
TTCGGCAAGA CCGAGGTTGC GTTGCGCGCC GCGTTCATGG CCGTGATGGG CGGCTACCAG
GTCGCGGTGC TGGTGCCGAC CACACTGCTG GCGGAGCAAC ACTTCAACAA CTTCTCGGAC
CGCTTCTCGC AATGGCCTGT GAAGCTCGCC GAGCTGTCAC GTTTCCGCAC CGCAAAGGAA
CAGGCGGCAG CACTTGAGGC GCTGAAGGAC GGCAGGATCG ACATCGTCAT CGGCACCCAC
AGGCTGATCC AGAAGGACGT CAAGTTCGCC CGTCTGGGCC TCGTCATTCT CGACGAGGAA
CATCGCTTCG GCGTGCGGCA GAAGGAGCAG CTGAAGGCGC TGCGCGCCGA GGTCGACGTG
CTGACGCTCA CCGCGACGCC GATCCCGCGC ACGCTCGCGA TGTCGCTCGA GGGCATTCGC
GACTTCTCGG TCATTGCAAC GGCGCCGCAG AAGCGGCTCG CGGTCAAGAC TTTCGTCCGG
TCCTTCTCCG GCGGGCTGAT CCGGGAGGCC GTGCTGCGCG AACTCAAGCG CGGCGGCCAG
GTGTACTTCC TGCACAACGA GGTTAGCACC ATCCAGAACA TGCGCGAGCG GCTCGAGAAA
CTGCTGCCCG AGGCGCGCAT CCGCGTCGGC CACGGCCAGA TGAGCGAGCG CGAACTCGAG
CAGGTGATGC GCGACTTCTA CCAGCAGCGC TACGACATCC TCTTGTGCAC GACGATCATC
GAGACTGGCA TCGACATCCC GACCGCGAAC ACCATTCTCA TCAATCGCGC CGACAAGTTC
GGCCTCGCCC AGCTGCATCA ATTGCGCGGG CGCGTCGGGC GCTCGCACCA CCAGGCCTTC
GCCTATCTGC TCGTCGAAGA GGACCGCACG CTGACGCCGC AGGCGAAAAA GCGGCTCGAG
GCGATCCAGC TCATGGAAGA ACTCGGCTCG GGCTTCCACC TCGCCCGCCA TGACCTCGAG
ATCCGCGGCG CCGGCGAGGT GCTGGGCGAG AAGCAGAGCG GCGAGATCCT CGAGGTCGGC
TTCTCGCTGT ACAACGACAT GCTGGCCGGC GCGGTGGCGA GCCTGAAGGC CGGCAAGGAG
CCCGACATGA GCCAGCCGCT CGACGTGGTC TCCGAAATCA ACCTGCACCT GCCGGCGCTG
CTGCCCGCCG ACTACTGCCC GGACGTCCAC GAGCGGCTGG TGTTGTACAA ACGGCTGGCG
AGCTGCCAGA CCCCGGACGA TCTGACGGCG ATGCAGGAGG AACTGGTCGA CCGCTTCGGC
GAACTGCCGG ACACGACACG CGCCCTGCTC GCGGTGCATC GCCTGCGCAT GGCGACCCGC
GCCTACGGCA TCGCCCGCCT GGACGTTTCC GGAGAGGGGA TGAGCGTGCA ATTCGTCCCC
AGCCCGCCCG TCGATCCGGG TAGAATCATC GCTCTGATCC AGGGCAAGGC CGGCTACAAG
CTCGCCGGTC CGGACCGGCT GAAGCTGAGC GTGAGCCTGC CTGACCTTGC CAGGCGGGTC
GGCGCGGTCA ACGCCTTCCT CGCCGCGCTC GGCCCGCCCG TGGGCGACTC CCTTTCATCC
GCAACCCATC ATTCCTCATG A
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| Protein sequence | MALLFHDPAL AVRRASGLAG AADALYLAEA ARSVAPLVIV CASAWDANRL TEELRWFDPA
LRVCAFPDWE TLPYDNFSPH PDLLSERLAT LYQISRGEFD LAVVALSTAL HRLAPPSFLA
AHTFFLKQKD RLDEAAFRAQ MTLGGYSNVN QVFAPGEFSV RGGLIDLFPM GSAVPYRIDL
FDNEIETLRA FDVDTQRSIY PVNEVRLLPA REFPLDEAGV TRFRQNFRER FEGDPSKSKL
YQDVSNGLAP AGIEYYLPLF FDATATLFDY LPQPTRLVAH GALDAAGQAF WSEAQGRHRL
LAGDKDRPLL PPADLFLATD AFFSRAKSYE RFDVAQAGDG LARPLPPISV DRREAHPVAK
LRSFIDGFRG KTLIVAPSAG RRETLHEYLA EHGLDATPCD GWAGCEAGRE RILLTHGPLA
EGFVTHDEAL AVITETELYA IPPKTRRARE ARATQIDSLL RDLSELKPGD PVVHAQYGVG
QYLGLATMDL GDGDTEFLQL EYAKGDKLYV PVANLHLISR YSGASEGEVP LHRLGTDQWE
KARRRAMQAA RDTAAELLNL YALRAAREGH AFSFSLHDYE AFAEGFGYEE TPDQAAAIAA
VMADMQSGKP MDRLVCGDVG FGKTEVALRA AFMAVMGGYQ VAVLVPTTLL AEQHFNNFSD
RFSQWPVKLA ELSRFRTAKE QAAALEALKD GRIDIVIGTH RLIQKDVKFA RLGLVILDEE
HRFGVRQKEQ LKALRAEVDV LTLTATPIPR TLAMSLEGIR DFSVIATAPQ KRLAVKTFVR
SFSGGLIREA VLRELKRGGQ VYFLHNEVST IQNMRERLEK LLPEARIRVG HGQMSERELE
QVMRDFYQQR YDILLCTTII ETGIDIPTAN TILINRADKF GLAQLHQLRG RVGRSHHQAF
AYLLVEEDRT LTPQAKKRLE AIQLMEELGS GFHLARHDLE IRGAGEVLGE KQSGEILEVG
FSLYNDMLAG AVASLKAGKE PDMSQPLDVV SEINLHLPAL LPADYCPDVH ERLVLYKRLA
SCQTPDDLTA MQEELVDRFG ELPDTTRALL AVHRLRMATR AYGIARLDVS GEGMSVQFVP
SPPVDPGRII ALIQGKAGYK LAGPDRLKLS VSLPDLARRV GAVNAFLAAL GPPVGDSLSS
ATHHSS
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