| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1560 |
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| Symbol | |
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| ID | 3672040 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | - |
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| Start bp | 1642916 |
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| End bp | 1643857 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637710246 |
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| Product | protease |
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| Protein accession | YP_315318 |
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| Protein GI | 74317578 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
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| TIGRFAM ID | [TIGR00706] signal peptide peptidase SppA, 36K type |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.22727 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.14187 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGAAC CTCAACCCAA CTGGGAACGC GACGTCCTGC AAAAGCTCGC ACTGGCCGCG
GTGCAGGAGC AACGCCGCAG CCGCCACTGG AGCATCCTCT TCAAGTCGCT CGGCTTTCTG
TATCTGTTCA TCGTGCTGTT CCTCGTGGCC GGCTGGTTCG GCGACGACGG CGTCGGCATC
CCCAAGGCAC ACACGGCGTT GGTCGACCTG CAGGGCGTGA TCGCGTCCGA CCAGGCGAGC
GCCGACGCCG TGATCACGAG CCTGCAGAGC GCCTTCGAGG ACAAGAAGAC CAAGGGCGTG
GTGCTGCGGA TCAACAGCCC AGGCGGCAGC CCCGTGCAGG CCGGCCAGAT CTACGACGAG
ATCCGGCGCC TGCGCAAGCT CCACCCGCAG GTGCCGCTTT ATGCGGTGGT CGACGACATC
TGCGCGTCCG GCGGCTACTA CGTCGCAGTC GGCGCCGACA AGATCTTCGT CGACAAGGCG
AGCATCGTCG GCTCGATCGG CGTGTTGATG GATGGCTTCG GCTTCACCGA GACGATGCAG
AAACTCGGCG TCGAGCGCCG CCTGCTGACC GCTGGTGAAA ACAAGGGCTT CCTCGATCCG
TTCTCGCCCG TCAACCCCGA GCAGCAGGCC TACGCCAAGC AGATGCTGGA GGAGATCCAC
GGCCAGTTCA TCGCCACCGT ACGCGAGGGC CGCGGCAAGC GCCTGAAGGA GACGCCCGAC
ATGTTCACCG GTCTGGTCTG GAGCGGCGAG CGCAGCATCC AGCTGGGGCT CGCTGACGAA
ATCGGCAGCC TCGATACGGT CGCACGCGAC GTCATCAAGG CCGAGGACAT CGTCGACTTC
ACGAAGGAGG AGAGCCTCGC CGAGCGCCTC GCGGGCCGCC TCGGCGCGAC GATGGCCAAA
GCGATGGGGT TGACGGATCG CGCGGGCGTG CAGTTGCGGT GA
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| Protein sequence | MSEPQPNWER DVLQKLALAA VQEQRRSRHW SILFKSLGFL YLFIVLFLVA GWFGDDGVGI
PKAHTALVDL QGVIASDQAS ADAVITSLQS AFEDKKTKGV VLRINSPGGS PVQAGQIYDE
IRRLRKLHPQ VPLYAVVDDI CASGGYYVAV GADKIFVDKA SIVGSIGVLM DGFGFTETMQ
KLGVERRLLT AGENKGFLDP FSPVNPEQQA YAKQMLEEIH GQFIATVREG RGKRLKETPD
MFTGLVWSGE RSIQLGLADE IGSLDTVARD VIKAEDIVDF TKEESLAERL AGRLGATMAK
AMGLTDRAGV QLR
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