| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1480 |
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| Symbol | |
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| ID | 3673593 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | - |
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| Start bp | 1565966 |
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| End bp | 1569004 |
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| Gene Length | 3039 bp |
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| Protein Length | 1012 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637710165 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_315238 |
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| Protein GI | 74317498 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCAAG ACAGCCGGAC GAGACTCGGT TGGCCGGCGC GCGTTGCGCT GTTTGTTGGT
GTAGCGACTG TTTTAGGTGG GATGGCCGGT GCGAGCCTGG TGCAGGACAC GGGCCTGGCG
CGGTTTTTCG ACAATCTGCA CTGGACCGCG AGCACCATCA CCGCCGCGGT GCTCGCCTGC
TTCGCGGCGG GGTCGCCGCG TTCTCCGGAA AGCGCGCGCG GCCTGCGCTG GATCGCGGCG
GGCCTGACGG CCTACGCGAT CGGCCAGCTC GTCTGGGACG CGCAGGCCTT GCTAGGCTAC
GCCGACTTCC CATCCCCCTC CGATTTCTTC TATCTGCTGC TCGGCCCCCT GGTCGCGACG
GGGCTCATGT TCGAAGCCTT CCGCGTCGGC GACGCCGCGG AGCGCAAGAC GCTCCTGCTC
GATTCGATCG GCCTCGCGAT CGGCGTCACG CTGCTGGTGC TCGTGCTCTA TCTGCCGGCC
GGCGGCCAGA TCAAGCTGCT CAGCGTCGCG GTGATGCTCG CGTATCCCGC GAGCCTGATC
GCCGCCGCGT CGATCGGACT GGTCGCCGAG CCGACGCTGC GCCTCCGCTT CTCGTGGAGC
TACTGGCTGT TCCTGCTGTC GCTCGTCGGC AGCGCGACCG TCTGGATGAT TTGGAATACC
TGGGCGCTGC GCGGCGAAAC CGTCGCCAAC ATCAGGGTCG ACGCCGTGTT CTCACTGACG
GCGCTTGGAA TGGGCGTCGC CACGCTTTAC TGGCAGGTCG GCGCGTCGCC GAACCTGCAC
TGGGAGCGCT GGAGTCAGGC GATCGTGCGC GTGCTCCCCC TCGCGACGGT CGTCCTTGCG
GGCTCGGCGG TGGTGTTGCT GGGCGACCGC ACCGACGTCT CCGCTACGTC GCGCACGGCC
GTCACCATCG CGTCGCTGAC CGTCATCGTC CTCGCGATGC TCAGGCAGGG CATGCTGCTG
CGCGAACACG CCCAGCTCAA GATCGTCACC CGCAACCTCG AGGAAAGCGA GCGGCAGAAG
AACCTGATCC TGCATACGCT GCCCGACCTC GTCTGGCTCA AGGACGCCGA CGGCGTCTAC
CAGATGTGCA ATCCGGCCTT CGAACGCTTC ACCGGCAGAA CCGAGGCCGA AATGCGCGGC
AAGACCGACT TCGACATCGT CGGCCCCGAA CTCGCGCGCA AGTTCCGCAA CGAGGACGCC
CAGGCCATGC TGGCGGACCA CCCGCTCACG AGCATGCACG CACTCCAGGC GGTGGACGGG
CGCGACGTCC AGATCGAGTC GGTGAAGACC ACGCTGCGCG ACCGCGACCG CAGGGTGCTC
GGCATCCTCG GCATCGCGCG CGACGTCACC GAACGGCAGC GCGCGAGCGA GCAGCTTGCC
CTCGTGAATT TCGCGCTCAA CCACGTCAAG GAAGCGGCCC TGCTCGCCGA CGAGAACGCG
CAGTTTCACT ATGTGAACGA CGAGGCCTGC CGCTCGCTCG GGTGGACGCC CGAGGAACTG
CTACGGCTCA AGGTCACCGA CATCGACCGC GACCTGACCG GACGCGGCCA GTGGCGCGCG
CTCTGGGAGC AGATCAAGGT GCTTAATTCG ATGACAATCG AAGGCCACTA CAAGACGCGC
AGCGGCAGGA CTTTCCCGGT CGAGGTCAGC GTCAATTATT TCGTCTACGG CGGCCGGGAA
TACGTGCTGA GCCTCGTGCG CGACGTCACC GAGCGCAAGG AGGTCGAAGC GCAGATCCGC
AGCCTAGCCT ACTTCGATTC GCTGACCGGC CTGCCCAACC GCCGGCTGCT GCTCGACCGC
CTGAACCAGG CGCGGCTTTC GAGCGAACGC ACCCGCGAGT ATGGCGCGCT GATGATCCTC
GACCTCGACC GCTTCAAGAC GCTCAACGAC ACGCAAGGCC ACGACGTGGG CGACCGCCTG
CTGATCGACG TGGCCCGTCG CCTGACCGCG AGCGTGCGGC AGAACGACAC CGTCTGCCGG
CTCGGCGGCG ACGAGTTCGT CGTCGTGCTC GAAGGCTTCG GCAGCGACGA GGACCAGGCC
GTCACCCAGG CCGAAGCGAT CGCCGAGAAG GTCCGCGCGG CGCTCAACCA GCCGTATTCG
CTCAGCGGCA ACGGCTCGCG CTTCCACAGC ACGACGAGCG TCGGACTCAC GCTCTTCTGC
GGGCACGACG CCACCGCCGA CATGTTGCTG AAGCAGGCCG ACGTCGCGCT CTACCAGGCC
AAGGACGCCG GGCGTAACCT CGTGCGCTTC TTCAACCCGG CGATGCAGGC GGCGATCGAT
ACGCGCATGG CGATGGAAGC GGCGCTGCGC CAGGCCTTGG AGCGCGATGA ATTCCATGTC
TACTACCAGC CCCAGGTCGA CCAGCGCGAG CGCGTGATCG GCGCCGAAGC CCTGTTGCGC
TGGCGCCCGC AGGGCAACGA AGCGATTTCA CCGCTCGAGT TCATCCCGCT CGCGGAGGAA
ACCGGCCTCA TTCTGCCGAT CGGCAAGTGG GTACTCGACG TGGCCTGCGC GCAGCTCAAG
GCCTGGGAGA GCGACCCGCG CGCGGCGCAT CTCAAGATCG CCGTGAACGT CAGCGCGCGG
CAGTTCCACG AGCCCGATTT CGTCGCGACG GTGCAGGACA GCCTCGCGCG CAGCGGCGTA
GACCCGACCC GGCTCCAGCT CGAGCTGACC GAGAGCGTCG TGCTCGAGAA AATCGAGACC
GTGGTCAGTC GCATGGAGGA ACTGAACGCG CTCGGCGTGA GCTTCTGCCT CGACGACTTC
GGCACCGGCT ACTCGTCCTT GTCCTACCTC AAGCGCCTGC CGCTCGATCA GGTCAAGATC
GACCAGTCCT TCGTCCGCGA CGTCGTCGAC GATTCGAACG ACGCCGCGAT CGTCCAGGCG
ATCATGGCGA TGAGCCGTTC GCTCGGCCTG AACGTCATCG CCGAGGGCGT CGAGACCCAC
GCGCAGCGGG ACTTCCTCGC CGGAAAATGC CTCGGCTACC AGGGCTTCCT GTTCTGCGAG
CCGATTCCGA TCGAGCAGTG GGAGCGCGTG CTGAAGTAG
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| Protein sequence | MNQDSRTRLG WPARVALFVG VATVLGGMAG ASLVQDTGLA RFFDNLHWTA STITAAVLAC
FAAGSPRSPE SARGLRWIAA GLTAYAIGQL VWDAQALLGY ADFPSPSDFF YLLLGPLVAT
GLMFEAFRVG DAAERKTLLL DSIGLAIGVT LLVLVLYLPA GGQIKLLSVA VMLAYPASLI
AAASIGLVAE PTLRLRFSWS YWLFLLSLVG SATVWMIWNT WALRGETVAN IRVDAVFSLT
ALGMGVATLY WQVGASPNLH WERWSQAIVR VLPLATVVLA GSAVVLLGDR TDVSATSRTA
VTIASLTVIV LAMLRQGMLL REHAQLKIVT RNLEESERQK NLILHTLPDL VWLKDADGVY
QMCNPAFERF TGRTEAEMRG KTDFDIVGPE LARKFRNEDA QAMLADHPLT SMHALQAVDG
RDVQIESVKT TLRDRDRRVL GILGIARDVT ERQRASEQLA LVNFALNHVK EAALLADENA
QFHYVNDEAC RSLGWTPEEL LRLKVTDIDR DLTGRGQWRA LWEQIKVLNS MTIEGHYKTR
SGRTFPVEVS VNYFVYGGRE YVLSLVRDVT ERKEVEAQIR SLAYFDSLTG LPNRRLLLDR
LNQARLSSER TREYGALMIL DLDRFKTLND TQGHDVGDRL LIDVARRLTA SVRQNDTVCR
LGGDEFVVVL EGFGSDEDQA VTQAEAIAEK VRAALNQPYS LSGNGSRFHS TTSVGLTLFC
GHDATADMLL KQADVALYQA KDAGRNLVRF FNPAMQAAID TRMAMEAALR QALERDEFHV
YYQPQVDQRE RVIGAEALLR WRPQGNEAIS PLEFIPLAEE TGLILPIGKW VLDVACAQLK
AWESDPRAAH LKIAVNVSAR QFHEPDFVAT VQDSLARSGV DPTRLQLELT ESVVLEKIET
VVSRMEELNA LGVSFCLDDF GTGYSSLSYL KRLPLDQVKI DQSFVRDVVD DSNDAAIVQA
IMAMSRSLGL NVIAEGVETH AQRDFLAGKC LGYQGFLFCE PIPIEQWERV LK
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