Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tbd_1456 |
Symbol | |
ID | 3673569 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiobacillus denitrificans ATCC 25259 |
Kingdom | Bacteria |
Replicon accession | NC_007404 |
Strand | + |
Start bp | 1539712 |
End bp | 1543350 |
Gene Length | 3639 bp |
Protein Length | 1212 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637710141 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_315214 |
Protein GI | 74317474 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.4231 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGACGAATC TTCCGATCTC GACTCGACTG CTGTTGAGCT ACCTCCTCGT CGCCGTGCTG CCGCTTGCCG GCCTCGCGGC GTTCTATCTC GCCTCGTTCG AGGCCTCGCT GACGCAAACC GTGCTCGCGA ACATGGCGAG CGTCGCCGAC AAGAAAGCCG CGCAGATCGA CAGCTACCTG CGCGAGCGCT CGGAGGACGT CGCCCAGCTC GCCCTGCGCC CCGCGGTCCG CAACGGGTTG CTCGAACTCA CGCGCGCGTT TCGCGCGGGC GGCCCCGCTG CGCCGGCCTA TCTCGACGCC ACGCTTCAAC TGCGGCGGGC GCTCGAAGAT GGCGGAGCCG CGTCGGGTTT CTACGACCTG CTGCTGGTCG ACGCCGAAGG CAACGTGCTG TTCACGCTCA AGCGCGAGCC CGACCTGCTC TCGAATTTGC GCCACGGCCC CTACCGCGAC ACCGAACTCG CAGCGGGATA CGCGCGCGCG ATGCGGAGCG GCAAGCCGCT GCTCACGCGC TTTGCGCCCT ACGCGCCATC CGACAACCGC CCGACGGCGT TTTACGTGAC GCCCCTGCGC ATCGACGGCG AGGTCCACGG CGCGCTCGCC TTGCAGCTCG ACGTGCAGCG CCTCATGACG GTCACGGTCG ACCGCATCGG CCTCGGACGC ACTGGCGAAA CGGTTCTGGC GCAACGCGAC GGGGACGAGG CGTATTACAC CGGCCCGCTG CGCCACGTGC GTGACGCCGC CTACCGCTAT CGCGTGCCGC TCAAGCAGGG GGCTGCCCCG ATGATCGCGG CGCTCGCCGG CAGGAATGGC GACGGGGTCG TGCGCGACTA CGCCGGGATC GAGACGGTCG CGGCGTGGCG TCATCTTCCG GCCCTGGACT GGGGCATGGT CGTGAAAATC GACGCCGACG AGGCGCTCGC GCCCGCGCAC CATTTGCGCC AGCTGACCTA CGTGGCGCTC GCGCTGTTTC TACTGCTCTC GGCTGCAACC GCCTTTTTGC TCGGCCGCCG CTTCGCCCGC CCGATTCGCG CGATGACGCG CGTCGCGGAC CAGATCGCCG CCGGCGATCT GCGTCAGCGC GTGCCGCAGG ACGGAGGCGA CGAACTCGGA CGTCTGGCCG CTGCATTCAA TCGCATGGCC GACACGCTGG CGGCGTCCTA TGACAACCTC GAAGCCGAGG TGGAAAAACG CTCGCGCGAA TTGCGCGAAC TTTCCGCGCT GCAGGGCGCG ATCCTCGAGC ACGCGGGGGC GCTGGTCGTG GTCCTCGACC GCGAGGGCCG CATCCGCCGC TTCAACCGTG CGTGCGAGGC TTTGACGCAG TATTCGTTTT CCGAGGTCGA AGGCCGCCAG GTATGGGATT TCATCCCGCC CGAGGAACGA CGGATCGTGC AGGACGAGGC GTTTGCGGTC CTCTTCAACG ATCCGGAGCA GTCCCGGAGC ACGCTCACCA ATCACTGGGT CGCGCGCGAC GGAGGTCGCC GTCTGATCGA ATGGTCCAAT TCCGTGTTGC ACGACGCGCA GGGCAAAGTC GAATTCGTCG TCGCCGTGGG CAACGACGTC ACCGATAAAA TGCGGGCCGA AGCCGCGCTC AAGGAAAGCG AGAGCCGGCT CAAAGAGGCG CAGCGTATCG CCCAGGTCGG CAGCTGGGCG CTCGATCTCG TCACGGGTAA ATTGATCTGG TCGGACGAGA TGTTTCGCAT TTTCGAAACC GACGAGGCGG CGTTCGGCCA GTCGTACGAG GCCTTCCTCG ATGCACTCCA TCCGGAAGAC CGGGAGCACG TGAACAAGGC CTACATGCAT TCGGTCACCA ACCACACGCC CTATGACCTC GTCCACCGGC TTCTTCTGCC GGACGGCCGG GTCAAATGGC TGCATGGGCG CGGCGAGACA CGCTACGGCA AGAACGGCGA TCCGATCGCT TCCTGCGGTA CCGTGCAGGA CATCACGGCC CGCAAGAAGC AGGAAGACGC GCTGCGGCTC TACGCGAGCA TTTTCGAGCA CAGCGGCGAA GCGATCCTGA TCGCCGACCA GGCGCGCCAC ATCATCGCGG TGAACCCTGC GTTCACCAAC CTGACGGGCT ATGCGCTCGA CGACATCCGC GGCGAGGAAC CGACCATTCT TGCCGGGGGG CAAGCGTCCG AAGAGAGCTA TCGCAGCACC TGGGCGTCGC TCGAGCAAAC TGGCTATTGG CAGGGCGAAA TCATCGACCG CCGCAAGGAC GGGACGCTCT ATCCGAAGTG GATGGCGGTA TCGGTCGTGC GCGATGCGGA CGGCGTCCTC ACCCATTACG TCGCGAGTTT CACCGACATC ACCGAGCGCA AGCTCGCAGA GGCACAGATC AAACATCTCG CCTATCACGA CCCGCTCACC GGGCTCAGCA ACCGCTTCAG CCTTCAGACG CAACTCGACC AGACCCTCGC GCTGGCGCGT CGCGAACAGC GCACCCTGGC GGTCGTCTTC CTCGACCTCG ACCGCTTCAA GTCGATCAAC GATAGCCTCG GTCACGCGCT CGGCGACCAG TTGCTCGTCG AGGTCGCCCG TCGTCTGCGC GACAACGTAC GCGACAGCGA CATCGTCGCA CGCCTCGGCG GCGACGAGTT CGTCGTCGTG CTGACCGAAG TGGGCGACGC AGCAGGCGCG GCGCGCGTGG CCGACAAGCT GCTGGGCGCG CTGGTTCCGC GCTACCGGAT CGGCGGGCAC GCGCTGCACA CCACCGCGAG CATCGGGATC TCGCTCTATC CGCACGACGG CGACGACGCT GACGCTTTGA TGAAGAACGC CGATACCGCG ATGTATCACG CCAAATCGCA AGGTCGCGAC AACGTGCAGT TCTTTACGCC CGAGATGAAT CAGTCGGTGC TCAAACGCCT GCAGTTCGAC CACGATCTTC GGGTGGCCGT CGAAGCAGGC CAGTTCGAAT TGCATTACCA GCCGCAGATC AACAGCACGA GCGGCCGGGT CGTGAAGGTC GAAGCGCTGG TTCGCTGGCA GCACCCGCGC GAGGGCTTGG TGTCGCCGGC AGAATTCATT CCGATCGCCG AGGAGACAGG ACTGATTCTG CCGCTTGGTG AGTGGGTGCT CAACGAGGCC TGTCGCCAAC TCAGGCTCTG GCGCGACGCG GGTATCACCG ACCTGACCGT CGCGGTCAAT CTTTCGGCGC ATCAGTTGCA CTCGCCCGCC CTGATTCCCA TGGTCGCGCG CACACTCGGC AACCACGGAC TCGAGGGCGC CGACCTCTGT CTCGAAATCA CCGAGTCGGT CGCCATGCGC GACACGACGG CAAGCATCGC GCAACTCCAG GCGCTGCGCG ACCTCGGCAT TCATCTGTCA ATCGACGACT TCGGCACAGG CTACTCGTCG TTGAGTTACC TCAAGCTGCT GCCGATAGAC ACGCTGAAAC TCGATCAGTC CTTCGTGTGC GAGATCGAGT TCAACCCCAG CGACGTCGCG ATCTGTGCGG CGACGATCGC GCTCGCGCAC AGTCTCGGTC TCGAGGTCGT CGCCGAAGGT ATCGAGACCG AGACCCAGCG CAGGCTGCTC GCCTCGCATC GCTGCGACTT CATGCAGGGC TATCTGTTCA GCGCGCCGCT GCCGGCAGAG CGCGCGCTTG CCTACATACG CGAGCAGCAG GCCGCGTGA
|
Protein sequence | MTNLPISTRL LLSYLLVAVL PLAGLAAFYL ASFEASLTQT VLANMASVAD KKAAQIDSYL RERSEDVAQL ALRPAVRNGL LELTRAFRAG GPAAPAYLDA TLQLRRALED GGAASGFYDL LLVDAEGNVL FTLKREPDLL SNLRHGPYRD TELAAGYARA MRSGKPLLTR FAPYAPSDNR PTAFYVTPLR IDGEVHGALA LQLDVQRLMT VTVDRIGLGR TGETVLAQRD GDEAYYTGPL RHVRDAAYRY RVPLKQGAAP MIAALAGRNG DGVVRDYAGI ETVAAWRHLP ALDWGMVVKI DADEALAPAH HLRQLTYVAL ALFLLLSAAT AFLLGRRFAR PIRAMTRVAD QIAAGDLRQR VPQDGGDELG RLAAAFNRMA DTLAASYDNL EAEVEKRSRE LRELSALQGA ILEHAGALVV VLDREGRIRR FNRACEALTQ YSFSEVEGRQ VWDFIPPEER RIVQDEAFAV LFNDPEQSRS TLTNHWVARD GGRRLIEWSN SVLHDAQGKV EFVVAVGNDV TDKMRAEAAL KESESRLKEA QRIAQVGSWA LDLVTGKLIW SDEMFRIFET DEAAFGQSYE AFLDALHPED REHVNKAYMH SVTNHTPYDL VHRLLLPDGR VKWLHGRGET RYGKNGDPIA SCGTVQDITA RKKQEDALRL YASIFEHSGE AILIADQARH IIAVNPAFTN LTGYALDDIR GEEPTILAGG QASEESYRST WASLEQTGYW QGEIIDRRKD GTLYPKWMAV SVVRDADGVL THYVASFTDI TERKLAEAQI KHLAYHDPLT GLSNRFSLQT QLDQTLALAR REQRTLAVVF LDLDRFKSIN DSLGHALGDQ LLVEVARRLR DNVRDSDIVA RLGGDEFVVV LTEVGDAAGA ARVADKLLGA LVPRYRIGGH ALHTTASIGI SLYPHDGDDA DALMKNADTA MYHAKSQGRD NVQFFTPEMN QSVLKRLQFD HDLRVAVEAG QFELHYQPQI NSTSGRVVKV EALVRWQHPR EGLVSPAEFI PIAEETGLIL PLGEWVLNEA CRQLRLWRDA GITDLTVAVN LSAHQLHSPA LIPMVARTLG NHGLEGADLC LEITESVAMR DTTASIAQLQ ALRDLGIHLS IDDFGTGYSS LSYLKLLPID TLKLDQSFVC EIEFNPSDVA ICAATIALAH SLGLEVVAEG IETETQRRLL ASHRCDFMQG YLFSAPLPAE RALAYIREQQ AA
|
| |