| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1440 |
|---|
| Symbol | |
|---|
| ID | 3673390 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiobacillus denitrificans ATCC 25259 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007404 |
|---|
| Strand | + |
|---|
| Start bp | 1528302 |
|---|
| End bp | 1528778 |
|---|
| Gene Length | 477 bp |
|---|
| Protein Length | 158 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637710125 |
|---|
| Product | type II secretion system transmembrane protein |
|---|
| Protein accession | YP_315198 |
|---|
| Protein GI | 74317458 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.00799419 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCGCG CGCCCGCAGG CTTCAGCCTG ATCGAACTCA TGGTCACGCT GGCCGTGCTG
GCGCTCCTGG CGAGCGTCGC GCTGCCCTAT GGCCAGCTTG CGCTGCAACG CCAGAAGGAG
GTCGAATTGC GCGAGGCATT GCGCGAGATC CGCGGCGCGC TCGACGCCTA CCGCCAGGCC
GTGCGCGAGG GCCGGGTCGA CGCGCCGGCC GACGCGAGCG GCTATCCGCC CGATCTCGAC
GCGCTCTGGC AGGGCGTCGC CGACAAGACC AAGCCGGACG CAAGCAAGCT TTATTTCCTG
CGTCGTCTGC CGCGTGATCC CTTGTTCCCC GACGCGGCGG CGCCGCCCGC GTCGACCTGG
GGCCTGCGCA GCTATGCGAG TCCGCCCGAC GCCCCGGCCG CCGGAAAAGA CGTATTCGAC
GTCTATTCGC TTTCGCCCGC GCTCGGCCTC AACGGCGTGC CCTACCGTGA GTGGTGA
|
|---|
| Protein sequence | MARAPAGFSL IELMVTLAVL ALLASVALPY GQLALQRQKE VELREALREI RGALDAYRQA
VREGRVDAPA DASGYPPDLD ALWQGVADKT KPDASKLYFL RRLPRDPLFP DAAAPPASTW
GLRSYASPPD APAAGKDVFD VYSLSPALGL NGVPYREW
|
|---|
| |