| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1417 |
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| Symbol | |
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| ID | 3673479 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | - |
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| Start bp | 1505219 |
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| End bp | 1508383 |
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| Gene Length | 3165 bp |
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| Protein Length | 1054 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637710102 |
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| Product | hydrophobe/amphiphile efflux-1 HAE1 |
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| Protein accession | YP_315175 |
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| Protein GI | 74317435 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCGCT TTTTCATCGA CCGGCCCATT TTCGCGTGGG TCATCGCCAT CGTCATCATG
CTCGCCGGCG CGCTGTCGAT CCTGACACTG CCGGTTTCGC AATATCCGGC GATCGCGCCG
CCGACGGTCG CGATCAACGC GAGCTATCCG GGCGCGTCCG CGAAGACCGT CGAAGACTCG
GTCACGCAGG TCATCGAACA GAAGCTGACC GGCCTCGACA ACCTGCTCTA CATGAGTTCG
CAGTCCGACT CCTACGGCCG GGCGACGGTC ACGCTCACCT TCGACGCCGG CACCGACCCC
GACATCGCTC AGGTGCAGAC GCAGAACAAG CTCCAGCTCG CGCTGCCGTT GCTGCCGCTC
GCTGTGCAGC AGCAGGGCGT GCAGGTTGTG AAGTCGACGC GCAACTTCCT GATGATCATC
GGCTTCGTTT CCAAGGACGG TTCCATGAGC CGGACCGACC TGGCCGATTT CCTCAATTCG
ACCGTGCAGG AGCCGCTGTC GCGCGTCACC GGCGTCGGTG AGGTCCAGGT GTTCGGCGCG
CAGTACGCGA TGCGCATCTG GGTCGACCCG GGCAAGTTGA ACAAGTACCG GCTGACCCCG
GGCGACGTCG AGGAGGCGAT CCGGGAACAG AACAACCAGG TCTCCGCCGG CCAGCTCGGC
GGCACGCCCG CCGTGCCGGG CCAAGGGTTC ACCGCGTCGA TCACGGCGCA GAGCCGGCTG
CAGACCGTCG ACGAGTTCGA GCGCATCCTG CTGCGCAGCT CGGCGCAGGG CGGCGAGGTG
CGGCTGAAGG ACGTCGCGCG CGTCGAGATC GGCGCCGAGA ACTACGGCAT CGTCGGCCGC
TTCAACGGCC AGCCCGCCTC GGGCATCGGC ATCAAGCTCG CCGCGGGCGC CAACGCGCTC
GACACCGCCG AAGCCGTGAA GGCCAGGATC GAGCAGATGA AGGCCTATTT CCCGGCCGGT
CTCGAGACCG TCATCCCCTA CGACACGACG CCCTTCGTCC AGATTTCGAT CATGAACGTC
GTGTACACGC TGATCGAGGC GATCATCCTC GTGTTCCTGG TGATGTATCT GTTCCTGCAG
AACTTCCGCG CGACGCTGAT TCCGACGATC GCCGTGCCGG TCGTCCTGCT CGGCACCTTC
GGCGTGATGG CGGCGTTCGG CTTCTCGATC AACACGCTCA CGATGTTCGG GCTCGTGCTG
GCGATCGGCC TGCTCGTCGA CGACGCGATC GTCGTGGTCG AGAACGTCGA GCGCATCATG
AGCGAGGAGG GGTTGTCGCC GAAGGAGGCG ACCCGCAAAT CGATGGGGCA GATCACCGGT
GCGCTCGTCG GCATCGGCCT CGTGCTCTCG GCCGTGTTCG TGCCGATGGC CTTCTTCGGC
GGCTCGACCG GCGTCATCTA CCGCCAGTTC TCGATCACGA TCGTCGCCGC GATGGCGCTT
TCGGTGCTGG TCGCGATCAT CTTCACGCCG GCCCTGTGCG CGACGATGCT GAAGCCGGTC
GAAAAGGGCC ATGGCCACGG TGAAGGCGGC TGGTTCTCGG GATTCTTCGG CTGGTTCAAC
CGCATGTTCG CGCGCAACAC CGAGCGCTAC GAGTCCGCGG TCGGCAAGAT CCTCGGCCGC
AGCCTGCGCT TCCTGGCGAT CTACATCGCG ATCGTCGGCG TGCTCGCGCT GCTGTTCTTC
CGCATGCCGA CCGCCTTCCT GCCGGAGGAG GACCAGGGCG TGATGTTCAC CCAGGTCATC
CTGCCGGCGG GCGCGAGCCA GGAGCGCACG GTCGAGGTCC TGAAAAAGGT CGAGCACCAG
TACCTCGAGA ACGAGAAGGG CAATGTACGC TCGATTTTCG CCGCGGCCGG CTTCAGCTTC
GCCGGCCAGG GTCAGAACAT GGGCATCGGC TTCGTCAACC TCGAGCCCTG GGACCAGCGT
CACGAACCCG AACAGGACGT GAACTCGATC GCCGGGCGGG CCATGGGCGC GTTCTCGCAG
ATCAAGGAGG CGATGGTGTT CGCCTTCGTG CCGCCCGCCG TGCTCGAACT CGGCACCTCG
AGCGGCTTCA ACGTGCAACT GCAGGACCGC GCCGGCCTCG GTCACGACGC GCTGATCGCC
GCGCGCAACC AATTCCTCGG CATGGCCGCG CAGGACAAGC GTCTGGTCGG CGTGCGGCCG
AACGGCCAGG ACGACGTCGC CGAGTACCAA CTCGACATCG ACTACGCCAA GGCCGGCGCG
CTCGGCGTCT CGGTCGCCGA CATCAACGAC ACGCTGGCGA CCGCGTGGGG CGGCACCTAC
GTCAACGACT TCATCGACCG TGGGCGGATC AAACGGGTCT ACCTGCAAGC CGACGCCGAC
GCACGCATGA AGCCTGAAGA CCTCGCGAAG TGGTACGTGC GCAACACGGC GGGCGAGATG
GTGCCGCTGT CGGCGTTCAC GCGCGCGCAC TGGGCCTACG GCTCGCCGCG CCTCGAACGC
TTCAACGGCC AGCCCTCGGT CGAACTGCTC GGCCAGGCGG CGCCGAGCCT GTCCTCGGGC
GATGCCATGG CGGCGGCCGA GGAGATCATC GCCAAGCTGC CGGCCGGCAT CGGCTACGAA
TGGACCGGCA CCTCGTTCGA GGAGCGCCGC AGCGGCTCAC AGGCGCCGGC GCTCTACGCA
CTGTCGCTGC TGGTCGTGTT CCTGTGTCTC GCCGCGCTCT ACGAGAGCTG GTCGGTGCCG
TTCGCGGTGA TGCTCGTGGT GCCGCTCGGC GTCTTCGGTG CCATGCTCGC CGCGAGCGGA
CTCGGATTGT CGAACGACGT GTATTTCCAG GTCGCACTCC TGGCGACGAT CGGCCTGTCG
TCGAAGAACG CGATCCTGAT CGTCGAGTTC GCCAAGGCGC AGATGGAGAA GGAGGGCCGC
GACCTGATCT CGGCGACCCG CGAGGCCGTG CGCATGCGTC TGCGGCCGAT CCTGATGACC
TCGCTCGCCT TCGGCTTCGG CGTGCTGCCG CTCGCCCTTG CCAGCGGCGC GGGTTCGGGC
GCACAGAATG CGGTGGGAAC CGGCGTCCTC GGCGGCACGA TTGCCGGCAC GCTGCTCGGA
ATCTTCTTCA TCCCGCTGTT CTACGTGGTT ATCAAGCGGG TATTCAAGGA CAAGCCGCGG
CCAGGCAGCG TCGCCGCCGC CCCCGTGCCG CAGGAGCTCA AGTGA
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| Protein sequence | MARFFIDRPI FAWVIAIVIM LAGALSILTL PVSQYPAIAP PTVAINASYP GASAKTVEDS
VTQVIEQKLT GLDNLLYMSS QSDSYGRATV TLTFDAGTDP DIAQVQTQNK LQLALPLLPL
AVQQQGVQVV KSTRNFLMII GFVSKDGSMS RTDLADFLNS TVQEPLSRVT GVGEVQVFGA
QYAMRIWVDP GKLNKYRLTP GDVEEAIREQ NNQVSAGQLG GTPAVPGQGF TASITAQSRL
QTVDEFERIL LRSSAQGGEV RLKDVARVEI GAENYGIVGR FNGQPASGIG IKLAAGANAL
DTAEAVKARI EQMKAYFPAG LETVIPYDTT PFVQISIMNV VYTLIEAIIL VFLVMYLFLQ
NFRATLIPTI AVPVVLLGTF GVMAAFGFSI NTLTMFGLVL AIGLLVDDAI VVVENVERIM
SEEGLSPKEA TRKSMGQITG ALVGIGLVLS AVFVPMAFFG GSTGVIYRQF SITIVAAMAL
SVLVAIIFTP ALCATMLKPV EKGHGHGEGG WFSGFFGWFN RMFARNTERY ESAVGKILGR
SLRFLAIYIA IVGVLALLFF RMPTAFLPEE DQGVMFTQVI LPAGASQERT VEVLKKVEHQ
YLENEKGNVR SIFAAAGFSF AGQGQNMGIG FVNLEPWDQR HEPEQDVNSI AGRAMGAFSQ
IKEAMVFAFV PPAVLELGTS SGFNVQLQDR AGLGHDALIA ARNQFLGMAA QDKRLVGVRP
NGQDDVAEYQ LDIDYAKAGA LGVSVADIND TLATAWGGTY VNDFIDRGRI KRVYLQADAD
ARMKPEDLAK WYVRNTAGEM VPLSAFTRAH WAYGSPRLER FNGQPSVELL GQAAPSLSSG
DAMAAAEEII AKLPAGIGYE WTGTSFEERR SGSQAPALYA LSLLVVFLCL AALYESWSVP
FAVMLVVPLG VFGAMLAASG LGLSNDVYFQ VALLATIGLS SKNAILIVEF AKAQMEKEGR
DLISATREAV RMRLRPILMT SLAFGFGVLP LALASGAGSG AQNAVGTGVL GGTIAGTLLG
IFFIPLFYVV IKRVFKDKPR PGSVAAAPVP QELK
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