Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tbd_1416 |
Symbol | |
ID | 3673478 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiobacillus denitrificans ATCC 25259 |
Kingdom | Bacteria |
Replicon accession | NC_007404 |
Strand | - |
Start bp | 1503810 |
End bp | 1505219 |
Gene Length | 1410 bp |
Protein Length | 469 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 637710101 |
Product | RND efflux system outer membrane lipoprotein NodT |
Protein accession | YP_315174 |
Protein GI | 74317434 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCCGCC TTCCCAGCCT GAGCGTGACG CTCGCCGCAG CGTTCTTGAG CGCGTGCAGC ATGATGCCGC GCTACGAGCG GCCCGCCGCG CCCGTCCCGG ACGCCTTCCC CGGTTCTGCG CTGGCGAGCC CGGCGACCGC CGACGCACCG CCTGCGGACG CGATCGCTTG GCGCGACTAC TTCGCCGACC CGCACCTGCG CGAGGTGATC GCACTCGCGC TCGCCAACAA CCGCGACCTG CGCGTCGCGG CGCTCAACAT CGAGCGCGCC CGTGCGCAGT ACCGGATCCA GCGCGCCGAT CTGTTTCCCG CAGTCAGTGC CGACGGCAGC GAAGTCGCGC AACGCTTGCC GCGCACGCTC AGCACGACCG GCGACGCCAC GGTGGTGCGC CAGTACAGCG CGACGATTGG TTTTTCGGCT TACGAGCTCG ATTTCTTCGG GCGCATCCGC AGCCTCAACG CCGAGGCGCT CGAACGCTAC CTCGGCACCG AGGAAGCGCG CCGCAGCGCC CAGATCAGCC TCGTCGCCGA AGTCGCCAAC ACCTGGCTGT TGCTCGGTTT CGACCGCGAA CGCCTCGCGC TCGCGCGCAA CACCTACGAA ACCCGGCAGA AGTCGCACGA TCTCACGCGC CGCAGCTTCG AGGCCGGCGC GGTCTCGGCG CTCGACCTCA ACCAGTCGCA GACGCTGCTG CAGACGGCGC GTGCGGACGT GGCGCAGTTC AGCGCCTTCG TCGCGCAGGA CGCGAACCTG CTCGCGCTGC TCGTCGGCGC GCCGGTTCCC GACACGCTGC AACCGGCGCG GCTGCCGGAC GGTGTTAGCG CGGTCGCCGA GCTGCCGGCC GGCGTGCCGT CGGAGGTGCT GGCCCGCCGG CCGGACATCC TGCAGGCCGA ACGTGCGCTG CGGGCGGCGA ACGCGAGCAT CGGCGCCGCG CGGGCGGCGT TCTTCCCGAG CATCAGTCTG ACCGCGGAGG CCGGCACGGC AAGCAGCACG CTCGACGGCC TGTTCGAAAG CGGGTCGGGC ACCTGGCGCT TCATCCCGCA GATCCGCATC CCGATTTTCG AGGCCGGGCG CCTGCGCGCG AGTCTCGACG TCGCCGAGGT CCAGCGCGAC ATCAACGTCG CGCAGTATGA ACGCGCGATT CAGGCCGCCT TTCGCGAAGT CGCCGACGCG CTCGCCGAGC GCGCGACGCT CAGCGAGCGT CTCGACGCGC GGCAAAAGCA GGTCGAGGCG ACGCGCGCGG GCTTCGGCCT GTCCGAGGCG CGCTACAAGA GCGGCGTCGA CAGCTACCTC GGTCTGCTCG ACGCGCAGCG CAGCCTCTAT GCGGCCGAGC AGGCGCTGAT CGCCGAGCGG CTCGTCGACG CGACCAATCG CGTGACGCTC TATCGCACGC TCGGCGGAGG CTGGCGCTGA
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Protein sequence | MSRLPSLSVT LAAAFLSACS MMPRYERPAA PVPDAFPGSA LASPATADAP PADAIAWRDY FADPHLREVI ALALANNRDL RVAALNIERA RAQYRIQRAD LFPAVSADGS EVAQRLPRTL STTGDATVVR QYSATIGFSA YELDFFGRIR SLNAEALERY LGTEEARRSA QISLVAEVAN TWLLLGFDRE RLALARNTYE TRQKSHDLTR RSFEAGAVSA LDLNQSQTLL QTARADVAQF SAFVAQDANL LALLVGAPVP DTLQPARLPD GVSAVAELPA GVPSEVLARR PDILQAERAL RAANASIGAA RAAFFPSISL TAEAGTASST LDGLFESGSG TWRFIPQIRI PIFEAGRLRA SLDVAEVQRD INVAQYERAI QAAFREVADA LAERATLSER LDARQKQVEA TRAGFGLSEA RYKSGVDSYL GLLDAQRSLY AAEQALIAER LVDATNRVTL YRTLGGGWR
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