| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1404 |
|---|
| Symbol | |
|---|
| ID | 3672505 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiobacillus denitrificans ATCC 25259 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007404 |
|---|
| Strand | + |
|---|
| Start bp | 1488549 |
|---|
| End bp | 1490117 |
|---|
| Gene Length | 1569 bp |
|---|
| Protein Length | 522 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637710089 |
|---|
| Product | respiratory nitrate reductase beta subunit |
|---|
| Protein accession | YP_315162 |
|---|
| Protein GI | 74317422 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1140] Nitrate reductase beta subunit |
|---|
| TIGRFAM ID | [TIGR01660] nitrate reductase, beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.314304 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.935444 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGTCA GAGCGCAATT CGCCTTCGTC TTCAACCTGG ACAAGTGCAT CGGATGTCAC
ACCTGCTCGG TGACCTGCAA GAACGTCTGG ACCAACCGCA AGGGCGTCGA GTACGCCTGG
TTCAACAACG TCGAGTCCAA GCCCGGCGTC GGCTACCCCA AAAGCTGGGA AGACCAGAGC
AAGTGGAAAG GCGGCTGGGA GCTCAGGAAC GGCAAGTTGG AGTTGAAATC CGGCAACCGC
CTATCCAAGC TCGTGAACAT CTTCGCCAAC CCGGACATGC CGGAGATCGA GGACTACTAC
GAACCCTTCA CTTACAACTA CGCGCATTTG CAGAACGCGC CGCTGTCGGA GGCCGCTCCG
ACCGCGCGCC CGATGTCGCA GATCGACGGC AGCCGGATGG AGAAAATCCA GTGGGGCCCG
AACTGGGAAG ACGACCTCGC CGGCGAGTTC GCCAAGCGCA GCAAGGACAA GAACCTCGAC
AACATCCAGA AGGAGATGTA CGCCCAGTTC GAGAACACCT TCCACATGTA TCTGCCGCGC
ATCTGCAATC ACTGCCTGAA TCCGGCCTGC GTGGCGGCGT GTCCGTCGGG TTCGATCTAC
AAGCGCGAAG AGGACGGCAT CGTGCTCGTC GACCAGGACA AATGCCGCGG CTGGCGCATG
TGCATTTCCT CCTGCCCGTA CAAGAAGGTG TTCTACAACT GGGAATCCGG CAAGGCCGAG
AAATGCATCG GCTGCTATCC GCGCGTCGAG TCCGGGATGC CGACCGTATG CTCGGAATCC
TGCGTCGGGC GCATCCGCTA CAACGGCATC ATGCTGTATG ACGCCGACAA GATCGAAGCG
CTCGCCAGCA CCGAGAACGA GCAGGACCTG TACGAGGCGC AGTGCAACAT CTTCCTCGAC
CCGCACGATC CTGAAGTCAT CGCCGCCGCG CGCGCCGAGG GCATCAACGA GGACTGGATC
GTCGCGGCAC AGAAGTCGCC GATCTACAAG ATGGCGATCG ACTGGAAGAT CGCCTTCCCG
ATGCACCCGG AGTTCCGCAC GCTGCCGATG GTCTGGTACG TGCCGCCGCT CTCACCCGTA
CAGTCGCAAA TCGACCAGGG CAATCTGCCG GTCGGCCCCG ACGGCGCGAT TCCGCTGGCC
GGCACGATGC GCACGCCGAT CCAGTACCTC GCCAACCTGC TGACCGCCGG CAAGACCGCA
CCGATCGAAA GCGCGCTCAA CCGCCTGATC GCGATGCGCA GCTACCAACG CTCGGTGCAC
GTCGAGGGCG TGGCCGATAC CCGCGCCCTC GACAAGGCCG GCATCACCGA GGACCAGGCC
AAGGAGATGT ATCGCTACCT CGCGATAGCC AACTACGAGG ACCGTTTCGT GATCCCGACC
GGGCACGAGG AAGTGCGCCT CGAAGACTTC CACGGCTTCC AGGGACAGAA CGGCTTCACC
TTCGGCAACG ACTCATCGGC CGGCATTTCG GTCAACTCGC TGTTCCCCGA GCGGCGCAAG
GAGACCGTGG AGCCGAGGGA AGAGGCGCCC TCGCGCCGCG TCATTCCCAT CGTTCGCAGC
GACTACTAA
|
|---|
| Protein sequence | MKVRAQFAFV FNLDKCIGCH TCSVTCKNVW TNRKGVEYAW FNNVESKPGV GYPKSWEDQS
KWKGGWELRN GKLELKSGNR LSKLVNIFAN PDMPEIEDYY EPFTYNYAHL QNAPLSEAAP
TARPMSQIDG SRMEKIQWGP NWEDDLAGEF AKRSKDKNLD NIQKEMYAQF ENTFHMYLPR
ICNHCLNPAC VAACPSGSIY KREEDGIVLV DQDKCRGWRM CISSCPYKKV FYNWESGKAE
KCIGCYPRVE SGMPTVCSES CVGRIRYNGI MLYDADKIEA LASTENEQDL YEAQCNIFLD
PHDPEVIAAA RAEGINEDWI VAAQKSPIYK MAIDWKIAFP MHPEFRTLPM VWYVPPLSPV
QSQIDQGNLP VGPDGAIPLA GTMRTPIQYL ANLLTAGKTA PIESALNRLI AMRSYQRSVH
VEGVADTRAL DKAGITEDQA KEMYRYLAIA NYEDRFVIPT GHEEVRLEDF HGFQGQNGFT
FGNDSSAGIS VNSLFPERRK ETVEPREEAP SRRVIPIVRS DY
|
|---|
| |