Gene Tbd_1366 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTbd_1366 
Symbol 
ID3672467 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiobacillus denitrificans ATCC 25259 
KingdomBacteria 
Replicon accessionNC_007404 
Strand
Start bp1446133 
End bp1448349 
Gene Length2217 bp 
Protein Length738 aa 
Translation table11 
GC content63% 
IMG OID637710051 
Productdiguanylate cyclase/phosphodiesterase 
Protein accessionYP_315124 
Protein GI74317384 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTGTCTAC CGCTCAAGAA GCGGTGCCAG GTGCCGAATA CGCAAGAAGG AGACAAATCC 
TCGGTCGACA ACGAACGGGA AAAATACAAT GACAAACATC GCAAACCCTT ACGGCCATCC
GCCGGCCGGC CGCTCCGCCC GCTGGGCTGG CGGCTCTCAC TGCCCACGCT CCGAGTCGAG
ACACGTCTAG CTGTTGCGAT GTCGCATCAG TCCCCGATTC TGAGCACGCG CCCGGCTCCG
CCCCGCGACG CTGCGACCGC GTGCGCCAGG TCGAACTACG TCGAGCCGAC GATACGGAGC
ATCGCCGGTG CCTTCATCCT CGCGTGCGGG ATCCTGGTCT TGATCAAGCC GGAATGGTCC
GTGCTGTGGG CCGCGACCCT GTGCTTTGTC GGCTTCAACC TGTTCCAGTC CGGCTTCACG
CAGTTCTGCG TGATGGAAAA GCTGCTGAAG AAGCTGCGCT TCAAAAGCGA ACTCGACGAA
ATCCGTACCC TGAGCCGATC GCACGCGGAA GCCGAGGCAC GGGCCGCGTT CTACGACACG
CTCGGGCTCC TCAACGAAGT CGTCGTCGAA CTGTCGCGCG AGGGCGAACT CGCGTTCCTA
TCCGAACACT GGACCAAGCT GCTCGCGGCC GACGGGCGGC GCAACGCCGA TTTTCTCGGG
CTCGCCTTCC TCTCCTTCGT CAAACAACAC GACCGCGACA CCCTCGAACA GCGTCTGAGC
GCTTTGCTCA AGGGCGAGAG CGACATCGTG ACGCTGCGCT TCCGCATGCA GCGCGAGGAC
AGACTCGAGC ACTGGGTGGA AGGGAAGTTC GCCCGCCATC ACAAGCACGG GCAGGTGCAC
GGCATTCGCG GCGTGCTGCG CGACGTGACC GAAGCCTACA TGCAGGAAAA GCGCATCAGC
CACATGGCGA TGCACGACGC CTTGACCGGG CTTCCGAACC GCACCTATCT CGACGCACGC
ATCAACGAAG CGATCGAACA ATCGCGCAGC AGCGCGACGA AATTCGCCCT GCTCTTCATC
GATCTCGACA ACTTCAAACG TATCAACGAC CTCTACGGTC ACAAGGCGGG CGATCAGTTG
CTCGTCAGCG TCGGCGAACT CCTGCGCGCC AGCCTGCGGG CGACCGACGT GCTCGCGCGC
TGGGGCGGCG ACGAGTTTGT CGTGCTGCTG CCCTTCCCCG GGGAGATCGA CATGGTGCGC
AGAATCGCGA GCGAGCTGCT GGACGGCCTG CGAAACGATC TGGAGAAGCA GTGTCGCGAC
ACCTTCGTCA CCGTGAGTAT CGGTGTCGCG ATCTACCCCG ACGATGCGGA ATCGGCCGAG
ACGCTCCTCG TTCAGGCGGA CAAGGCCTTG TTTTACGCCA AGTCGCAGGG GCGCAACAAC
ATCCAGCTGT ACGCGGATCT GCAGACCCGC GCACCCGGCT TCGAGGACGC CGAAATGACC
GCTCGCTTCG TCGCCGCGGT CAAACAGAAC CTGCTCGAAG TCCACTACCA GCCGGTCATG
GACGCGGCGA ATCCACGGTG CCCGGTAAGC GTCGAAGCCC TTGCGCGCTG GCACGACGAC
AAGTACGGCT GGGTCAATCC GGCCGACTTC ATTCCGCTCG CCGAGAATAT GGGGCTCATC
CACGAGGTCG GACGGCAGGT TCTGGAACAG GCGCTCGACC ACTTCAGCAA GCGCAACAAC
ACCTGCGACG CACTCAAGCT CGCCGTGAAC GTATCGAAAC GTCAGTTGAT GTCGCCCGAT
TTCTACCCGA CGCTGCTTGC GACCGTCGAG CGCTTTGGCG TGCATCCCCG CCAGATCAAA
CTCGAGATCA CCGAAAGCAT CGCGCTCGAG GGCATCGAGC GGGCGCGTGC GCTTCTGCAG
CGGCTCTCCG ACGCGGGATT CACGCTTTCG CTCGATGATT TCGGCACGGG GTTTTCCTCG
CTCTCGCACG TCCACGAGTT GCCGTTCGAC GAAATCAAGA TCGACATCTC GTTCGTTCGC
CGCATCAAGA CGCCCGAAGG ACGCGTCCTC GTCAAGACCA TCGTCGACAT GGGGCACGCC
ATGCGCCTCG CGCTTGTCGC CGAGGGCGTC GAGGACAGCG AAACCGCGGC GATCCTGCAG
GGCATGGGCG TCGAAATGCT GCAGGGCTAC CATTTCAGCC GGCCCATGCC GAAAGAGGTA
TGTGCCGATT TCATCGCCAG ACTGCAAGCG CCTCCGGCCG CCGCGGCCGC CGCCTGA
 
Protein sequence
MCLPLKKRCQ VPNTQEGDKS SVDNEREKYN DKHRKPLRPS AGRPLRPLGW RLSLPTLRVE 
TRLAVAMSHQ SPILSTRPAP PRDAATACAR SNYVEPTIRS IAGAFILACG ILVLIKPEWS
VLWAATLCFV GFNLFQSGFT QFCVMEKLLK KLRFKSELDE IRTLSRSHAE AEARAAFYDT
LGLLNEVVVE LSREGELAFL SEHWTKLLAA DGRRNADFLG LAFLSFVKQH DRDTLEQRLS
ALLKGESDIV TLRFRMQRED RLEHWVEGKF ARHHKHGQVH GIRGVLRDVT EAYMQEKRIS
HMAMHDALTG LPNRTYLDAR INEAIEQSRS SATKFALLFI DLDNFKRIND LYGHKAGDQL
LVSVGELLRA SLRATDVLAR WGGDEFVVLL PFPGEIDMVR RIASELLDGL RNDLEKQCRD
TFVTVSIGVA IYPDDAESAE TLLVQADKAL FYAKSQGRNN IQLYADLQTR APGFEDAEMT
ARFVAAVKQN LLEVHYQPVM DAANPRCPVS VEALARWHDD KYGWVNPADF IPLAENMGLI
HEVGRQVLEQ ALDHFSKRNN TCDALKLAVN VSKRQLMSPD FYPTLLATVE RFGVHPRQIK
LEITESIALE GIERARALLQ RLSDAGFTLS LDDFGTGFSS LSHVHELPFD EIKIDISFVR
RIKTPEGRVL VKTIVDMGHA MRLALVAEGV EDSETAAILQ GMGVEMLQGY HFSRPMPKEV
CADFIARLQA PPAAAAAA