Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tbd_1366 |
Symbol | |
ID | 3672467 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiobacillus denitrificans ATCC 25259 |
Kingdom | Bacteria |
Replicon accession | NC_007404 |
Strand | + |
Start bp | 1446133 |
End bp | 1448349 |
Gene Length | 2217 bp |
Protein Length | 738 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637710051 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_315124 |
Protein GI | 74317384 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTGTCTAC CGCTCAAGAA GCGGTGCCAG GTGCCGAATA CGCAAGAAGG AGACAAATCC TCGGTCGACA ACGAACGGGA AAAATACAAT GACAAACATC GCAAACCCTT ACGGCCATCC GCCGGCCGGC CGCTCCGCCC GCTGGGCTGG CGGCTCTCAC TGCCCACGCT CCGAGTCGAG ACACGTCTAG CTGTTGCGAT GTCGCATCAG TCCCCGATTC TGAGCACGCG CCCGGCTCCG CCCCGCGACG CTGCGACCGC GTGCGCCAGG TCGAACTACG TCGAGCCGAC GATACGGAGC ATCGCCGGTG CCTTCATCCT CGCGTGCGGG ATCCTGGTCT TGATCAAGCC GGAATGGTCC GTGCTGTGGG CCGCGACCCT GTGCTTTGTC GGCTTCAACC TGTTCCAGTC CGGCTTCACG CAGTTCTGCG TGATGGAAAA GCTGCTGAAG AAGCTGCGCT TCAAAAGCGA ACTCGACGAA ATCCGTACCC TGAGCCGATC GCACGCGGAA GCCGAGGCAC GGGCCGCGTT CTACGACACG CTCGGGCTCC TCAACGAAGT CGTCGTCGAA CTGTCGCGCG AGGGCGAACT CGCGTTCCTA TCCGAACACT GGACCAAGCT GCTCGCGGCC GACGGGCGGC GCAACGCCGA TTTTCTCGGG CTCGCCTTCC TCTCCTTCGT CAAACAACAC GACCGCGACA CCCTCGAACA GCGTCTGAGC GCTTTGCTCA AGGGCGAGAG CGACATCGTG ACGCTGCGCT TCCGCATGCA GCGCGAGGAC AGACTCGAGC ACTGGGTGGA AGGGAAGTTC GCCCGCCATC ACAAGCACGG GCAGGTGCAC GGCATTCGCG GCGTGCTGCG CGACGTGACC GAAGCCTACA TGCAGGAAAA GCGCATCAGC CACATGGCGA TGCACGACGC CTTGACCGGG CTTCCGAACC GCACCTATCT CGACGCACGC ATCAACGAAG CGATCGAACA ATCGCGCAGC AGCGCGACGA AATTCGCCCT GCTCTTCATC GATCTCGACA ACTTCAAACG TATCAACGAC CTCTACGGTC ACAAGGCGGG CGATCAGTTG CTCGTCAGCG TCGGCGAACT CCTGCGCGCC AGCCTGCGGG CGACCGACGT GCTCGCGCGC TGGGGCGGCG ACGAGTTTGT CGTGCTGCTG CCCTTCCCCG GGGAGATCGA CATGGTGCGC AGAATCGCGA GCGAGCTGCT GGACGGCCTG CGAAACGATC TGGAGAAGCA GTGTCGCGAC ACCTTCGTCA CCGTGAGTAT CGGTGTCGCG ATCTACCCCG ACGATGCGGA ATCGGCCGAG ACGCTCCTCG TTCAGGCGGA CAAGGCCTTG TTTTACGCCA AGTCGCAGGG GCGCAACAAC ATCCAGCTGT ACGCGGATCT GCAGACCCGC GCACCCGGCT TCGAGGACGC CGAAATGACC GCTCGCTTCG TCGCCGCGGT CAAACAGAAC CTGCTCGAAG TCCACTACCA GCCGGTCATG GACGCGGCGA ATCCACGGTG CCCGGTAAGC GTCGAAGCCC TTGCGCGCTG GCACGACGAC AAGTACGGCT GGGTCAATCC GGCCGACTTC ATTCCGCTCG CCGAGAATAT GGGGCTCATC CACGAGGTCG GACGGCAGGT TCTGGAACAG GCGCTCGACC ACTTCAGCAA GCGCAACAAC ACCTGCGACG CACTCAAGCT CGCCGTGAAC GTATCGAAAC GTCAGTTGAT GTCGCCCGAT TTCTACCCGA CGCTGCTTGC GACCGTCGAG CGCTTTGGCG TGCATCCCCG CCAGATCAAA CTCGAGATCA CCGAAAGCAT CGCGCTCGAG GGCATCGAGC GGGCGCGTGC GCTTCTGCAG CGGCTCTCCG ACGCGGGATT CACGCTTTCG CTCGATGATT TCGGCACGGG GTTTTCCTCG CTCTCGCACG TCCACGAGTT GCCGTTCGAC GAAATCAAGA TCGACATCTC GTTCGTTCGC CGCATCAAGA CGCCCGAAGG ACGCGTCCTC GTCAAGACCA TCGTCGACAT GGGGCACGCC ATGCGCCTCG CGCTTGTCGC CGAGGGCGTC GAGGACAGCG AAACCGCGGC GATCCTGCAG GGCATGGGCG TCGAAATGCT GCAGGGCTAC CATTTCAGCC GGCCCATGCC GAAAGAGGTA TGTGCCGATT TCATCGCCAG ACTGCAAGCG CCTCCGGCCG CCGCGGCCGC CGCCTGA
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Protein sequence | MCLPLKKRCQ VPNTQEGDKS SVDNEREKYN DKHRKPLRPS AGRPLRPLGW RLSLPTLRVE TRLAVAMSHQ SPILSTRPAP PRDAATACAR SNYVEPTIRS IAGAFILACG ILVLIKPEWS VLWAATLCFV GFNLFQSGFT QFCVMEKLLK KLRFKSELDE IRTLSRSHAE AEARAAFYDT LGLLNEVVVE LSREGELAFL SEHWTKLLAA DGRRNADFLG LAFLSFVKQH DRDTLEQRLS ALLKGESDIV TLRFRMQRED RLEHWVEGKF ARHHKHGQVH GIRGVLRDVT EAYMQEKRIS HMAMHDALTG LPNRTYLDAR INEAIEQSRS SATKFALLFI DLDNFKRIND LYGHKAGDQL LVSVGELLRA SLRATDVLAR WGGDEFVVLL PFPGEIDMVR RIASELLDGL RNDLEKQCRD TFVTVSIGVA IYPDDAESAE TLLVQADKAL FYAKSQGRNN IQLYADLQTR APGFEDAEMT ARFVAAVKQN LLEVHYQPVM DAANPRCPVS VEALARWHDD KYGWVNPADF IPLAENMGLI HEVGRQVLEQ ALDHFSKRNN TCDALKLAVN VSKRQLMSPD FYPTLLATVE RFGVHPRQIK LEITESIALE GIERARALLQ RLSDAGFTLS LDDFGTGFSS LSHVHELPFD EIKIDISFVR RIKTPEGRVL VKTIVDMGHA MRLALVAEGV EDSETAAILQ GMGVEMLQGY HFSRPMPKEV CADFIARLQA PPAAAAAA
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