Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tbd_1356 |
Symbol | |
ID | 3672457 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiobacillus denitrificans ATCC 25259 |
Kingdom | Bacteria |
Replicon accession | NC_007404 |
Strand | - |
Start bp | 1436467 |
End bp | 1437972 |
Gene Length | 1506 bp |
Protein Length | 501 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 637710041 |
Product | RND efflux system outer membrane lipoprotein NodT |
Protein accession | YP_315114 |
Protein GI | 74317374 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGAGCG CTGAAGCCAA GCCGACCGCC GATGCAGGGG GTTCGGGCGC GAGGCGTACT TGCACTCGCG CCGTCGTGGC CTCGGCGGTA CTGGCCAGCC TGCTCGCCGG CTGTGCCGTC GGGCCCGACT TCAAACGGCC GGCCGCGCCC ACGGTCGGCA CCTACACGGC GCAGCCTCTG CCGGCCGAAA CCGCGTCGGC GCCCGTCGCG CTGGGACAGG CGCAGCGCTT CGCCGACGCA CCGGTCGACG CGGCGTGGTG GCAGCGTCTC GGCCCGCCGA AGCTGTCCGC CTTGATCGAC GCCGCCTTCG AGGCCAGCCC CACGCTCGCT TCCGCGCAAT CGACCTTGCG GCAGGCGCAG GAACTGCATG CCGCGCGCGC GGGCTCGACG CTTTATCCGC AGGTCGACGC CGGACTCGGG GCGCAGCGGC AGCGGCTGAG TCCGAGCGCC CTGGGACAGG CCGGCGAGCC GCGGGAATTC AGCCTGTACA ACGCGAGCGT CGGCGTGCGT TACGAACTCG ACCTGGCGGG CGGAAACCGG CGCGCCCTCG AAGCCTTGCG CGCGCGCGTC GAGCACCGGC GCTTCGAGCT CGAAGGCGCT CGCCTAACGC TGGCGGCCAA CATCGTGACC ACGGCCATCA CCCAAGCCAT GCTCGCCGCG CAGATCGACG CCAGTGAAGC GATCCTGCGT GCGCAGGACG AGCAATTGGC GCTCGCACGG GAACGCGAGC GCCTCGGCCA GGCGTCGCCC GACGAGGTCC TCACGTTGCA AACACAGGTC GAGCAGACGC GCGCGAGCCT GCCGCCGCTG CGCCAGCGTC TGGACGAGAC TGCACATCTG CTCGCCGTGC TCGCCGGGCG CGCGCCGGGA GCAGGGGACA TGCCGAGCTT CAGCCTCGAG GAATTCACGC TTCCCGCTGA GTTGCCTCTG GTCGTGCCGT CCGAGCTGGC GCGCCGCCGC CCCGACATCC GCGCAGCCGA AGCGCTCATG CACGCCGCGA ACGCGGAATA CGGCGTCGCG GTCGCGAGGC TCTATCCGCA ACTCAAGCTC TCCGCGAACC TCGGCTCCCA GGCCTTGAGC ACCGGCGCCC TGTTCGGCAG CGGTTCGGCC GTGTGGAGCC TGGTCGGGCA ATTGACCCAG CCGCTTTTCA ATCCCGGTCT GCCTGCCGAA AAGCGCGCGT CGCTGGCCGC TTTCGAAGCC GCGTCGGCAA ACTACCAGGG CGTCGTGCTC GAAGCGCTGC GCGACGTGGC CGACGTCCTG CGCGCACTGG ACCACGACGC GAGCGCGCTT GCCGCGCTGG CAAGCGCCGA CGAAGCCGCG CAGGGCGCAC TCGAATCGAT GCGTCGCCGC TACGCGCTCG GCGCGGCGAG CTACCTCGAC ATTCTCACCG CCGAGCAGCA GGCCCAGCAG ACCCGGGTCA ATCTCGTCGC CGCCCAGGCG CAACGCCTCG TCGATAACGC GGCCTTGTAC CAGGCATTGG GGGGCGGCTG GACGGAGACG AACTGA
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Protein sequence | MASAEAKPTA DAGGSGARRT CTRAVVASAV LASLLAGCAV GPDFKRPAAP TVGTYTAQPL PAETASAPVA LGQAQRFADA PVDAAWWQRL GPPKLSALID AAFEASPTLA SAQSTLRQAQ ELHAARAGST LYPQVDAGLG AQRQRLSPSA LGQAGEPREF SLYNASVGVR YELDLAGGNR RALEALRARV EHRRFELEGA RLTLAANIVT TAITQAMLAA QIDASEAILR AQDEQLALAR ERERLGQASP DEVLTLQTQV EQTRASLPPL RQRLDETAHL LAVLAGRAPG AGDMPSFSLE EFTLPAELPL VVPSELARRR PDIRAAEALM HAANAEYGVA VARLYPQLKL SANLGSQALS TGALFGSGSA VWSLVGQLTQ PLFNPGLPAE KRASLAAFEA ASANYQGVVL EALRDVADVL RALDHDASAL AALASADEAA QGALESMRRR YALGAASYLD ILTAEQQAQQ TRVNLVAAQA QRLVDNAALY QALGGGWTET N
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