Gene Tbd_1356 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTbd_1356 
Symbol 
ID3672457 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiobacillus denitrificans ATCC 25259 
KingdomBacteria 
Replicon accessionNC_007404 
Strand
Start bp1436467 
End bp1437972 
Gene Length1506 bp 
Protein Length501 aa 
Translation table11 
GC content71% 
IMG OID637710041 
ProductRND efflux system outer membrane lipoprotein NodT 
Protein accessionYP_315114 
Protein GI74317374 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCGAGCG CTGAAGCCAA GCCGACCGCC GATGCAGGGG GTTCGGGCGC GAGGCGTACT 
TGCACTCGCG CCGTCGTGGC CTCGGCGGTA CTGGCCAGCC TGCTCGCCGG CTGTGCCGTC
GGGCCCGACT TCAAACGGCC GGCCGCGCCC ACGGTCGGCA CCTACACGGC GCAGCCTCTG
CCGGCCGAAA CCGCGTCGGC GCCCGTCGCG CTGGGACAGG CGCAGCGCTT CGCCGACGCA
CCGGTCGACG CGGCGTGGTG GCAGCGTCTC GGCCCGCCGA AGCTGTCCGC CTTGATCGAC
GCCGCCTTCG AGGCCAGCCC CACGCTCGCT TCCGCGCAAT CGACCTTGCG GCAGGCGCAG
GAACTGCATG CCGCGCGCGC GGGCTCGACG CTTTATCCGC AGGTCGACGC CGGACTCGGG
GCGCAGCGGC AGCGGCTGAG TCCGAGCGCC CTGGGACAGG CCGGCGAGCC GCGGGAATTC
AGCCTGTACA ACGCGAGCGT CGGCGTGCGT TACGAACTCG ACCTGGCGGG CGGAAACCGG
CGCGCCCTCG AAGCCTTGCG CGCGCGCGTC GAGCACCGGC GCTTCGAGCT CGAAGGCGCT
CGCCTAACGC TGGCGGCCAA CATCGTGACC ACGGCCATCA CCCAAGCCAT GCTCGCCGCG
CAGATCGACG CCAGTGAAGC GATCCTGCGT GCGCAGGACG AGCAATTGGC GCTCGCACGG
GAACGCGAGC GCCTCGGCCA GGCGTCGCCC GACGAGGTCC TCACGTTGCA AACACAGGTC
GAGCAGACGC GCGCGAGCCT GCCGCCGCTG CGCCAGCGTC TGGACGAGAC TGCACATCTG
CTCGCCGTGC TCGCCGGGCG CGCGCCGGGA GCAGGGGACA TGCCGAGCTT CAGCCTCGAG
GAATTCACGC TTCCCGCTGA GTTGCCTCTG GTCGTGCCGT CCGAGCTGGC GCGCCGCCGC
CCCGACATCC GCGCAGCCGA AGCGCTCATG CACGCCGCGA ACGCGGAATA CGGCGTCGCG
GTCGCGAGGC TCTATCCGCA ACTCAAGCTC TCCGCGAACC TCGGCTCCCA GGCCTTGAGC
ACCGGCGCCC TGTTCGGCAG CGGTTCGGCC GTGTGGAGCC TGGTCGGGCA ATTGACCCAG
CCGCTTTTCA ATCCCGGTCT GCCTGCCGAA AAGCGCGCGT CGCTGGCCGC TTTCGAAGCC
GCGTCGGCAA ACTACCAGGG CGTCGTGCTC GAAGCGCTGC GCGACGTGGC CGACGTCCTG
CGCGCACTGG ACCACGACGC GAGCGCGCTT GCCGCGCTGG CAAGCGCCGA CGAAGCCGCG
CAGGGCGCAC TCGAATCGAT GCGTCGCCGC TACGCGCTCG GCGCGGCGAG CTACCTCGAC
ATTCTCACCG CCGAGCAGCA GGCCCAGCAG ACCCGGGTCA ATCTCGTCGC CGCCCAGGCG
CAACGCCTCG TCGATAACGC GGCCTTGTAC CAGGCATTGG GGGGCGGCTG GACGGAGACG
AACTGA
 
Protein sequence
MASAEAKPTA DAGGSGARRT CTRAVVASAV LASLLAGCAV GPDFKRPAAP TVGTYTAQPL 
PAETASAPVA LGQAQRFADA PVDAAWWQRL GPPKLSALID AAFEASPTLA SAQSTLRQAQ
ELHAARAGST LYPQVDAGLG AQRQRLSPSA LGQAGEPREF SLYNASVGVR YELDLAGGNR
RALEALRARV EHRRFELEGA RLTLAANIVT TAITQAMLAA QIDASEAILR AQDEQLALAR
ERERLGQASP DEVLTLQTQV EQTRASLPPL RQRLDETAHL LAVLAGRAPG AGDMPSFSLE
EFTLPAELPL VVPSELARRR PDIRAAEALM HAANAEYGVA VARLYPQLKL SANLGSQALS
TGALFGSGSA VWSLVGQLTQ PLFNPGLPAE KRASLAAFEA ASANYQGVVL EALRDVADVL
RALDHDASAL AALASADEAA QGALESMRRR YALGAASYLD ILTAEQQAQQ TRVNLVAAQA
QRLVDNAALY QALGGGWTET N