| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1334 |
|---|
| Symbol | |
|---|
| ID | 3672435 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiobacillus denitrificans ATCC 25259 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007404 |
|---|
| Strand | - |
|---|
| Start bp | 1417804 |
|---|
| End bp | 1419297 |
|---|
| Gene Length | 1494 bp |
|---|
| Protein Length | 497 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637710019 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_315092 |
|---|
| Protein GI | 74317352 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[S] Function unknown |
|---|
| COG ID | [COG0845] Membrane-fusion protein
[COG5569] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCGCC AAACGATTAA AAAAACCGTG CTGGGCCTCT TCGTCGTGGT TGCACTGCTC
GCCGCCGGCG TGGCGGCCGG CCTCTGGTGG GCCGGCCGCT ACCCCACGGA TACGCAGGAT
ACCCACACCG CGGCCCCCGC GCAGCATGGT CGCACCGTGC TGTACTGGTA CGACCCGATG
GTGCCGCAGC AAAAATTCGA CAAGCCCGGC AAGTCGCCTT TCATGGACAT GGATCTGGTG
CCCAAATACG CCGACGAAGG CGGCGATGCC GCAACCGTCA AAATCGACCC CTGGGTGGCG
CAGAACCTGG GCGTGCGTCT GGCCACCGTC ACCCACGCAC CCTTCGGCAG CGACGTGACG
GCGACCGGCG TCGTCGGCTT CGACGAGCGC GAGGTGGCGA TCGTGCAGGC GCGCAGCGGC
GGCTTCGTGG AACGCGTGGC TAGGCTGGCG CCGAACGATG TCGTTCGATC GGGCGCCTTG
ATCGCGGAAC TGCTGGTGCC GGAGTGGGCG GCGGTGCAGC AGGAGTACCT GGCGCTCAAG
GCGCTGGGCG ACCCCTCACT GGAAGGCGCC GCGCGCGAGC GCATGCGCTT GAGCGGCATG
CCGGAAAGCC TGATTCGCGA CGTCGCCGCC CGCGGCAAGA TCAGGAATCG CATTGCGATC
ACCGCGCCGC GGGGCGGCGT GATCCAGGAA CTCGACGTGC GCGCCGGCAT GACCGTGATG
GGCGGCCAGA CTTTGGCGCG CATCAACGGC ATCGGCACCG TCTGGCTCGA CGTCGCGGTG
CCGGAAGCCC GCGCCGGCTC GGTGCGGATC GGGCAGGCGG CCGAGGCCCA TTTCGCTGCG
TTTCCGGGCG AACCGGTGCA GGGCCGCGTC ACCGCGCTGC TGCCGGCGCT GGACGATACC
GCCCGCACGC TGAGGGTCCG AGTCGAACTG CCCAATCCCG GCGGGCGCCT GCGGCCGGGA
TTGACCGCGC AGGTCAGCCT CAGGGGGGCG GGCGGCGACT CGGCGCTGCG CGTGCCAACC
GAAGCGGTGA TCCGCACCGG ACGCCGCGCG CTCGTCGTCG TGGCGGAGGC TGAGGGGCGC
TACCGGCCGG TCGAAGTCAC ATTGGGCGCC GAGTCGGGCA GCGACACCGT CATCCTGTCC
GGCCTCGCCG AGGGCCAGAA AGTCGTCGCC AGCGGCCAGT TCCTGATTGA CTCCGAAGCC
AGCCTGCAGG GCATCGTCGC GCGCGGGACA GGCGAAGCGG CCGCCGCGCC GGCCGCGCTG
CACGAGGCTG ATGGCGTAAT CGACGACATT TCCGCCGAAT ATGTGACGCT CACCCACGGC
CCCTTCAAGA CCCTGGCGAT GCCCGGCATG ACCATGGAGT TTCCGCTGGC CCGCCCTGAA
CTCGCCAAGG GCCTGAAGGC GGGCGACCGG GTGAGGGTCG GCGCGCGCGA GACCGCCGAC
GGGCTGGTAG TCGAAAAACT CGTCAAGACC GACAAGACGG GGGGCGCCAA ATGA
|
|---|
| Protein sequence | MNRQTIKKTV LGLFVVVALL AAGVAAGLWW AGRYPTDTQD THTAAPAQHG RTVLYWYDPM
VPQQKFDKPG KSPFMDMDLV PKYADEGGDA ATVKIDPWVA QNLGVRLATV THAPFGSDVT
ATGVVGFDER EVAIVQARSG GFVERVARLA PNDVVRSGAL IAELLVPEWA AVQQEYLALK
ALGDPSLEGA ARERMRLSGM PESLIRDVAA RGKIRNRIAI TAPRGGVIQE LDVRAGMTVM
GGQTLARING IGTVWLDVAV PEARAGSVRI GQAAEAHFAA FPGEPVQGRV TALLPALDDT
ARTLRVRVEL PNPGGRLRPG LTAQVSLRGA GGDSALRVPT EAVIRTGRRA LVVVAEAEGR
YRPVEVTLGA ESGSDTVILS GLAEGQKVVA SGQFLIDSEA SLQGIVARGT GEAAAAPAAL
HEADGVIDDI SAEYVTLTHG PFKTLAMPGM TMEFPLARPE LAKGLKAGDR VRVGARETAD
GLVVEKLVKT DKTGGAK
|
|---|
| |