| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1271 |
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| Symbol | |
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| ID | 3673361 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | - |
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| Start bp | 1336981 |
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| End bp | 1338159 |
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| Gene Length | 1179 bp |
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| Protein Length | 392 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637709956 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_315029 |
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| Protein GI | 74317289 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAATG AAACGCTCGA GGATGCCGTC CTTGCCAGTG AAACCTTGGC GCTCGCGGTC
GAACTGCTCA AGCGCCGCTC GGTCACGCCC GACGACGCCG GCTGCCACGA CCTGATCGCG
GCGCGGCTGC AAGCGCTTGG CTTCCACATC GAGCGCCATC GCCACAACGA CGTCGACAAT
CTGTGGGCGC GTCGCGGCAC GGCCTCCCCG GTCGTGTGCT TCGCCGGCCA TACCGACGTC
GTCCCGCCCG GGCCGCTCGA GCAGTGGCTC TCCGATCCTT TCGAGCCGAC GCTGCGCGAC
GGCAAGCTCT ACGCCCGCGG CGCCGCCGAC ATGAAAACCT CGGATGCGGC CTTCGTCACT
GCGACCGAGC GCTTCCTCGC CCGCCGTCCC GACCATCCGG GCTCGATCGC TTTCCTGCTG
ACTTCCGACG AGGAAGGTCC GGCGACCGAC GGCACGGTGC GCGTCGTCGA AGCGCTCAAG
GCACGCGGCG AACTGCTCGA CTATTGCATC GTCGGCGAGC CGACGAGCGC CGCCGAATTC
GGCGACACGA TCAAGAACGG ACGGCGCGGC TCGCTCTCGG GCACCCTGCG CGTGAAGGGT
GTACAGGGGC ACATCGCCTA CCCCCACCTC GCGAAAAACC CGATCCATCT CGCGGCGCCG
GCGATCGCCG AGCTCGCCGA GACGATGTGG GACGAAGGCA ATAGCTACTT CCCGCCGACG
ACCTGGCAGA TTTCCAACAT CCATGCCGGC ACCGGCGTCA CCAACGTGAT TCCGGGCATG
GTCGAGATCC AGTTCAATTT CCGCTTTTCC ACGGCCAGCA CGGCCGAGGG CCTGATGGAC
GCCGTCAACG AAATCCTCGA CAGCCACGGC CTCGACTACG AAATCGACTG GAACCTCTCC
GGCAAGCCCT TTCTCACGCC GCGCGGCGCC TTGTGCGACA GGCTCTCCGA AGCCGTCCAC
GAGGTCACCG GGCTCACGCC CGAGCTTTCG ACCACGGGCG GCACGTCGGA CGGCCGCTTC
ATCGCCGACA TCTGTCGCGA AGTCGTCGAG TTCGGCCCGC TCAACATGAG CATCCACAAG
CTGAACGAGC ACGTCGCACT CGAAAACGTC GAGCAGCTCG CAGCGGTTTA CGAGAAGGCG
CTGGAAAAGC TGCTGGGCGA GAGCGATGAA CGCGTTTGA
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| Protein sequence | MANETLEDAV LASETLALAV ELLKRRSVTP DDAGCHDLIA ARLQALGFHI ERHRHNDVDN
LWARRGTASP VVCFAGHTDV VPPGPLEQWL SDPFEPTLRD GKLYARGAAD MKTSDAAFVT
ATERFLARRP DHPGSIAFLL TSDEEGPATD GTVRVVEALK ARGELLDYCI VGEPTSAAEF
GDTIKNGRRG SLSGTLRVKG VQGHIAYPHL AKNPIHLAAP AIAELAETMW DEGNSYFPPT
TWQISNIHAG TGVTNVIPGM VEIQFNFRFS TASTAEGLMD AVNEILDSHG LDYEIDWNLS
GKPFLTPRGA LCDRLSEAVH EVTGLTPELS TTGGTSDGRF IADICREVVE FGPLNMSIHK
LNEHVALENV EQLAAVYEKA LEKLLGESDE RV
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