Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tbd_1265 |
Symbol | |
ID | 3673355 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiobacillus denitrificans ATCC 25259 |
Kingdom | Bacteria |
Replicon accession | NC_007404 |
Strand | + |
Start bp | 1326515 |
End bp | 1328791 |
Gene Length | 2277 bp |
Protein Length | 758 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637709950 |
Product | periplasmic sensor diguanylate cyclase/phosphodiesterase |
Protein accession | YP_315023 |
Protein GI | 74317283 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTGTACC GAATCTTGCT GCAGGTGTGG CTGGGCTGCG TCTTCCTGCT TGCTCCGGAG TCGGACGCGC ACGCCCAGCC GGTCCGCGTC GGCGTTTTCG AAAATCCGCC CATCGTTTCC GCCGGCCTTG ACGGCATGCC GCGCGGCATC TCGATCGACG TCATTCAACT CGTCGCCCAG CGCGAAGGCT GGCAGGTCAG CTATGTGAGC TCGCCGGTCG ACGATCTCAT CGGTCGCCTC GAACGCGGCG AGATCGACGT GCTCGCTGCC ATTGGCTACA GCGAGGAATA CGCGCGCAGA CTACGCCTGA GCCGCGAGAG CCTGATTGCG AACTGGGCCA TGATTTTCCG GCGCGCCGAC GTCGCGATCG ATTCCCTCCC GCAACTCAAG CGCCGGCGCG TGGCGCTCGT CCGCGGCAGC GTGCAGGCGA AGGCCCTGAT CAGGCTGGCG GAGCAGTTCG ACGCGCCGTT CAAGCCGGTC TATGTCGACG ACTTTCCGGC AGTCGTGCGT GCGCTGCAGG AACGCCGCGC CGACGCCGGC TCGGTCAATC GGCTGTTCGC GGTCGAGTAC GCGAACCAGC CCGGTGTGGT CGAGACGGCT ATCGTCTTCA GCCCGGTTTC GGTGCATTAC GCTGCGCCGA GAAGCGCCGA TCCCGCGCTG CTCGACGCCC TCGACCGTCA TCTCGCGGAA CTCAAGGCCG ACACCGATTC GGTCTATTAC ACATCGCTCA AGCGCTGGCT TGCCGCCGCG CCGGACGGGC GTCTGCCTCC CTGGTTGCCC TGGCTGATCG GCGGCGGCGG CGGCGCGCTG CTGCTCGCGC TCGCCTTCGT CGTCCTGCTT CGCCACAAGG TCGGGCGTCA GACTGGCGAA TTGCAGCGTC GTGCCGACCA GCTCGAACTC GAGGTCGAAC AGCGCGAGCA GGCGCAGCGC CATCTCAACC GGCTCGCCTA TTTCGATGGC CTGACGCGGC TGCCCAATCG CGAGGCCTTC CGACTGACCC TGAGCCAGGC GCTGCGCACG CTGAATGGCA GTGGCGGGCG TCTGGCCCTG CTTTTCGTCG ACGTCGACCG CCTGAAAAAC GTCAACGACG GCCTTGGCCA CCGTGCCGGC GACATGCTGC TGCAGCAGAT CGCAGGCCGT CTCCAGTCGG TTTTACGCGG CCACGACCAC CTGAGCCGCT TCGGCGGCGA CGAGTTCGTC GTCATCGTCT CCGAGATCGT CCGCGACACG GACGCCGAGC GGGTGGCTGG CCGCCTGCTC GCCGCCCTCG CGGCGCCGGT CGACATCGGC GGCACCCAGG TCTACACCGG CGCGAGCATC GGCATCGCGC TCTACCCCGA GGACGCCGAG TCGCTCGACG GCCTGCTCAA GCACGCCGAC ACCGCGATGT ACCAAGCCAA GGAGCAGGGC GGCAATCGCT ATGTCTTCTA TCACGCCCAG CAGACAGAAC GGGCCGTCGA GCGGCTCACG CTGGATACCC GGCTGCGCCA GGCGCTCGAG CGCAACGAAC TGGTCCTGCA TTACCAGCCG ATCGTCGAAC TGGCGAGCGG ACGCATCGTC GGCGGCGAGG CCCTGGTGCG CTGGGAAGAC CCCGAGCGCG GACTGGTCAT GCCGTCGGCC TTCATTCCGG CTGCCGAAGA CACGGGCTTG ATCGTGGCAC TCAGCGACTG GGTACTCGAG GCCTGCTGCA CCCAGCTGCG CGCGTGGCAG CAGCAGGGCC GGGCGGCGGA CGATCTGACG CTCTCGGTCA ACATCTCGAC GCGCCAGTTC GAGGGCGAGC ATCTGACCCG CGCGGTCGAC CGGGCGCTCG CGCGCAGCGG CCTGCGTCCG GACTGCCTCG AACTCGAGAT CACCGAGAAC GTCATGCTCG TCATGACCGA CGAAGTCCGC ACTTGTCTGG ACGCGCTGCG TGCACGCGGC GTGCGGCTCG CGCTCGACGA TTTCGGCACG GGCTATTCGA GCCTGAGCTA TCTGAGCCAG TTGCCTTTTC ACGGACTGAA AATCGACCAG TCCTTCGTGC GCAAGATCCC AGCGCACCCG AGCGAGACGC AGATCGTCAC GACGATACTG GCGCTCGCCA GGGGGCTGGG GATGGAGGTC GTCGCCGAGG GCATCGAAAC GGCCCAGCAG TACGCCTTCC TGCGCGATCG CGGCTGCGAG TTCGGACAGG GAAACCTCAT GAGTACCCCG CAGGCGGCGG ACGCGTTCGC GTCCCTGCTC GACCGGCAAA AGGCCAGCGG CCAGCGCCCG GTGCACGGGC ACGAAACGGC CCCTTGA
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Protein sequence | MVYRILLQVW LGCVFLLAPE SDAHAQPVRV GVFENPPIVS AGLDGMPRGI SIDVIQLVAQ REGWQVSYVS SPVDDLIGRL ERGEIDVLAA IGYSEEYARR LRLSRESLIA NWAMIFRRAD VAIDSLPQLK RRRVALVRGS VQAKALIRLA EQFDAPFKPV YVDDFPAVVR ALQERRADAG SVNRLFAVEY ANQPGVVETA IVFSPVSVHY AAPRSADPAL LDALDRHLAE LKADTDSVYY TSLKRWLAAA PDGRLPPWLP WLIGGGGGAL LLALAFVVLL RHKVGRQTGE LQRRADQLEL EVEQREQAQR HLNRLAYFDG LTRLPNREAF RLTLSQALRT LNGSGGRLAL LFVDVDRLKN VNDGLGHRAG DMLLQQIAGR LQSVLRGHDH LSRFGGDEFV VIVSEIVRDT DAERVAGRLL AALAAPVDIG GTQVYTGASI GIALYPEDAE SLDGLLKHAD TAMYQAKEQG GNRYVFYHAQ QTERAVERLT LDTRLRQALE RNELVLHYQP IVELASGRIV GGEALVRWED PERGLVMPSA FIPAAEDTGL IVALSDWVLE ACCTQLRAWQ QQGRAADDLT LSVNISTRQF EGEHLTRAVD RALARSGLRP DCLELEITEN VMLVMTDEVR TCLDALRARG VRLALDDFGT GYSSLSYLSQ LPFHGLKIDQ SFVRKIPAHP SETQIVTTIL ALARGLGMEV VAEGIETAQQ YAFLRDRGCE FGQGNLMSTP QAADAFASLL DRQKASGQRP VHGHETAP
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