| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1191 |
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| Symbol | |
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| ID | 3671552 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | - |
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| Start bp | 1251929 |
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| End bp | 1254439 |
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| Gene Length | 2511 bp |
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| Protein Length | 836 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637709875 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_314949 |
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| Protein GI | 74317209 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.668547 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAGCA AGACGAACCC CGACACCGAT CAGGGCGGGC TGCGCGCCCT GATCGTCGAA
GACTCCGAAG ACGATGCGCT GCTGCTGGCC GACCAGCTGC TGAGCGCCGA TTTCCAGCTC
GAGTGGCTAC GCGTCGACAC CGAGCAGGCG CTGCGCGAAG CGCTCGCCGA CGAATGGGAC
ATCGTGTTCT CCGATTACTC GATGCCGCAC TTCAGCGGCG CGCGGGCACT CGAAATCGTC
AAGCGGCACG ACCCGGACAT TCCTTTCATA TTCGTTTCCG GCACCATCGG CGAAGAGACC
GCAGTCAGCG GCATGCGCGC GGGCGCCCAG GATTACGTCA TGAAGGACAA CCTCGCCCGG
CTGTTGCCGG CGGTCGAGCG CGAGCTCGCG GAGGCGAGGG TGCGCCGCGA GCGGCGGCAG
ACCGAACACC TCGTACGCCG GTTGTCGCAG GCCGTCGAAC AGGCGGCCGA CAGTGTCTTC
ATCACCGACC GGCAGGGAAC GATCCAGTAC GTCAACCCCT CCTTCGAGCG CCTCACCGGC
TACAGCGCGG CCGAGGCCAT CGGCAGGACG CCCGCGCTCA TCAAGTCGGA TCGCCACGAC
GACGCCTTCT TCCATAAATT GTGGGACACC ATCCTGGCCG GCCGGATCTT CCAGGAAACA
CTGGTCAACC GGCGCAAGGA CGGCGGCCTG TTCTACGAGG AAAAAACCAT CGCCCCGCTG
TTCGACGAGG GGCGCGGGAT CGCGGGCTTC GTCTCGACCG GCCGCGACGT CACCGACCGG
ATTCGCGACG AGCAGACGCG CGGGCAGCTG CTGGAGATTC TCGAGGCGAC AACCGACTTC
GTCGCGATCA TCGAGGGCGA CGGGCGGCTG CGCTATCTCA ATCGCGCGGG CCGTGCCGTG
CTCGGATTGA CGGCGACCGA AGACGTCAGT TCGCGCCACA TCGCCCAATG TCACCCCGAA
TGGGCGACCC ATCGCCTGCT GATGGAAGCC TTCCCCACCG CGCGGCGCGA CGGCGCCTGG
CAGGGGGAGA TCGCGGCGCG GCTGGCCGAT GGGAGGGAAA TCCCCGTGTC CCAGGTCGTG
CTGGCGCACG GCGGCGCCAA CGAGATGCCC GAATTTTTCT CGACCATTGC CCGTGACATC
ACCGAACGCA AACACTTCGA GCAGGAACTG CGCCGGCAGG CGACGCACGA CGCGCTGACC
GGCCTGCCGA ACCGCATCCT GCTCGAAGAT CAGATCGAGG CGGTCGTCGC GCATTCCGCA
CGCAGCCACA AGCTCGCTTC GGTGCTGTTC CTCGATATCG ACAACTTCAA GCGCATCAAC
GAAAGCCTCG GGCACGCCGC GGGCGACGCC ATGCTGCGGC ACGCCGCGCA GCGGCTGCGC
GACTGCGTGC GCCCGACCGA CGTCGTGGCC CGTTACGGCG GGGACGAATT CACGATCGTG
CTCGGCGATC TGTCCCACGT CGACAACATC CCGGCCATTC TGCACAAGGT GCGCGCGGCC
TTCGAAACGC CGCTTGTCAT CTCGGGGCAG GAGGTGTACG CCTCGTTCAG CGTGGGTGTC
TCGGTCTACC CGCACGACGG CGACGACGGG GCGACGCTGC TGAAGAACGC CGACACGGCG
ATGTACCGCT CCAAGGCGAG CGGCCGCAAC CGCTACCAGT TCTACGCACC CGAAATGAAT
GCGCGCGGAC AGGAGCTGTT GTCCTTGGAA ACCGACCTCC GCCGCGCCCT CGATCGCGGC
GAGTTCCGCC TTCACTACCA GCCGCAGCTC GATCTGCGCG ACAACCGCAT CGCGGGCGTC
GAGGCCTTGT TACGCTGGAA GCATCCGCGC GATGGCGTGA TCGCACCGGG CGATTTCGTT
CCGCTGCTCG AGGATACGGG CTTGATCGTG CCCGTCGGCG AATGGGTGCT GCGCAACGCG
TGTACCCAGT ACCGCGCGTG CCGCGAATCC GGCGTCGCCC CGGTCAGGAT CTCGGTCAAT
GTCTCGGCCC GCCAGTTCAG GGAGGACACG CTGCTGCGGC AGGTCGAACA GGTGCTGCGC
GAGGAGTGCA TGCCGCCGCA TCATCTGGAA CTCGAAATCA CCGAAAGCAC GGCGATGCAG
GATGTCGCGG CGACCGGCGA CATTCTGGCC GCGCTGGACG CGCTCGGCGT ACGCCTCGCG
ATCGACGATT TCGGCACCGG CTATTCGTCG CTCGCCTATC TGAAGCGCTT TCCGCTCGAC
GCGCTGAAGA TCGATCAGGC GTTCATCCGC GACGCCCCGC GCGACGCCAA CATCGCGGCG
ATCGCCGAGG CGAGCATTTC GCTGGGACAC AAGCTCGGCC TGGAAGTCGT CGCGGAAGGC
GTCGAGACCG CGGAACAGCT TGCCTTCCTG CGCAGGCGCG CCTGCGATCT CATCCAGGGA
TTCCATTTCA GCCGGCCCCT GCCCGCCGAC GCGCTCACGC CGTTTCTCGC CAGGCACGCG
GCCGGGGGCA GCGGTGAGGC GGCCGCGTCC ACTGCGGATA GCGAGCCTTA G
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| Protein sequence | MKSKTNPDTD QGGLRALIVE DSEDDALLLA DQLLSADFQL EWLRVDTEQA LREALADEWD
IVFSDYSMPH FSGARALEIV KRHDPDIPFI FVSGTIGEET AVSGMRAGAQ DYVMKDNLAR
LLPAVERELA EARVRRERRQ TEHLVRRLSQ AVEQAADSVF ITDRQGTIQY VNPSFERLTG
YSAAEAIGRT PALIKSDRHD DAFFHKLWDT ILAGRIFQET LVNRRKDGGL FYEEKTIAPL
FDEGRGIAGF VSTGRDVTDR IRDEQTRGQL LEILEATTDF VAIIEGDGRL RYLNRAGRAV
LGLTATEDVS SRHIAQCHPE WATHRLLMEA FPTARRDGAW QGEIAARLAD GREIPVSQVV
LAHGGANEMP EFFSTIARDI TERKHFEQEL RRQATHDALT GLPNRILLED QIEAVVAHSA
RSHKLASVLF LDIDNFKRIN ESLGHAAGDA MLRHAAQRLR DCVRPTDVVA RYGGDEFTIV
LGDLSHVDNI PAILHKVRAA FETPLVISGQ EVYASFSVGV SVYPHDGDDG ATLLKNADTA
MYRSKASGRN RYQFYAPEMN ARGQELLSLE TDLRRALDRG EFRLHYQPQL DLRDNRIAGV
EALLRWKHPR DGVIAPGDFV PLLEDTGLIV PVGEWVLRNA CTQYRACRES GVAPVRISVN
VSARQFREDT LLRQVEQVLR EECMPPHHLE LEITESTAMQ DVAATGDILA ALDALGVRLA
IDDFGTGYSS LAYLKRFPLD ALKIDQAFIR DAPRDANIAA IAEASISLGH KLGLEVVAEG
VETAEQLAFL RRRACDLIQG FHFSRPLPAD ALTPFLARHA AGGSGEAAAS TADSEP
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