| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1173 |
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| Symbol | |
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| ID | 3671534 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | + |
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| Start bp | 1227318 |
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| End bp | 1229096 |
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| Gene Length | 1779 bp |
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| Protein Length | 592 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637709857 |
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| Product | alpha amylase domain-containing protein |
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| Protein accession | YP_314931 |
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| Protein GI | 74317191 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
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| TIGRFAM ID | [TIGR02402] malto-oligosyltrehalose trehalohydrolase |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGTTCG GCACCCGGAT CACGCCCGAG GGCGTGCGAT TTCGCCTGTG GGCGCCGGGA
TGCGAGCGGG TGATGCTGCA CATCGAGGAG GGGGCGGCAG TGGGGCGGAT GATGATGCCG
AGCGGCGACG GCTGGTTCGA GCTCCTAGTC GATGGGGCAG GTGCGGGAAC GCCTTATCGC
TTCGAGGTGA ACGACGGCCT GCGCGTCCCC GACCCGGCCT CGCGTTTCAA TCCCGACGAC
GTGCACGGAG CGAGCGTCGT CGTCGACCCG ACCGCCTTCG CCTGGCGTGA CACGGCGTGG
AAGGGGCGGC CCTGGGAAGA AGCAGTCGTG TACGAACTGC ACGTCGGGAC CTTCTCGCCG
TCTGGCACCT TCGCCGGCGT GATCGAGCGG CTCGACTACC TCGTCGACCT CGGTGTCACG
GCGATCGAGC TGATGCCGGT CGCGGACTTT CCGGGTGTGC ACAACTGGGG TTACGACGGC
GTCCTGCTGT TTGCGCCGGA CAGCCGCTAC GGCACGCCCG ACGACCTCAA GGCGCTCGTC
CAGTCCGCGC ACGACAAGGG GCTGATGGTG TTGCTCGACG TCGTCTACAA CCATTTCGGC
CCCGAGGGGA ATTACCTGCA TGTGTACGCG CGCAAGTTCT TCAGCGAGCG CCACCACACG
CTGTGGGGCG CCGCGATCAA CTTCGACGGC TCCGGCAGCC GTACCGTGCG TGATTTCTTC
ATCCACAACG CGCTCTACTG GCTGCAGGAA TACCACTTCG ACGGCCTGCG CCTCGACGCG
GTGCACGCGA TCATCGACGA TTCGGCGCGC CACATCCTCA CCGAGCTTGC CGAGCGCGTG
CACGCAGAGA TCGGCAGCGA GCGTGCCGTG CATCTGATCC TCGAGAACGA TGCCAACGAA
GCGCACCACC TTGGACAAGG TGGCTACACG GCGCAATGGA ACGACGACAT CCATCACGCG
CTGCACGTGC TCGCGACCGG GGAAGCCGAC GGCTATTACG GCGACTACGC CGATGCGCCG
CTCGTCCACC TCGGCCGCTG CCTGACCGAG GGCTTCGCCT ACCAGGGCCA GGCGTCGGCC
TACCACGAGG GCGAATCGCG GGGCGAGCCG AGCGGCCATC TCCCGCTGCA GGCTTTCGTC
GCCTTCGTGC AAAACCACGA TCAGGTGGGG AACCGCGCCT TCGGCGAGCG CCTGACGCAA
CTCGCTCCGG AATCCGCGCT GCGCGCGGTC GCCGCCGTCC TGCTGCTCGC GCCGTCGGTG
CCCATGCTGT TCATGGGCGA GGAGTTCGGC GCGCGGACGC CGTTCCAGTT CTTCTGCGAC
TTCGGCGGCG AACTGCGGGA CGCGGTGACG CAGGGACGGC GGCGGGAGTT CCGCAAGTTC
GCGCGCTTTG CCGACCCCGC CGCGCAAGCC GCGATACCCG ACCCGAACCG GCCCGAGACG
TTTCTCGCGT CGCGGCTCGA CTGGTCGGAG GCGGGCGCCG GCGCGCTCGA CCAATACCGC
GGCCTGCTGA AGCTGAGGCG TGAAACGATC GTCCCGCGCC TGCGCCTGAT CGAGCCCGGC
TCGGCCGCAT TCGAGGTCGT CGCGGGCGTC CTGCGCGTGC GCTGGGGCTT GCACGACGGC
GCCTCCCTGC AACTCACGGC CCATCTGTCG CAAGAGCCGC TCGGCGAGGT CGCGCTCGAA
GGCGAGGTCA TTTTCGCCAC CTCCGATGCG GCGGCGGCCG GCGTTCTCGG TCCCTGGTCG
GTCGTATGGA CGCTCGCGGC CGCGGAGACC CAGGCATGA
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| Protein sequence | MPFGTRITPE GVRFRLWAPG CERVMLHIEE GAAVGRMMMP SGDGWFELLV DGAGAGTPYR
FEVNDGLRVP DPASRFNPDD VHGASVVVDP TAFAWRDTAW KGRPWEEAVV YELHVGTFSP
SGTFAGVIER LDYLVDLGVT AIELMPVADF PGVHNWGYDG VLLFAPDSRY GTPDDLKALV
QSAHDKGLMV LLDVVYNHFG PEGNYLHVYA RKFFSERHHT LWGAAINFDG SGSRTVRDFF
IHNALYWLQE YHFDGLRLDA VHAIIDDSAR HILTELAERV HAEIGSERAV HLILENDANE
AHHLGQGGYT AQWNDDIHHA LHVLATGEAD GYYGDYADAP LVHLGRCLTE GFAYQGQASA
YHEGESRGEP SGHLPLQAFV AFVQNHDQVG NRAFGERLTQ LAPESALRAV AAVLLLAPSV
PMLFMGEEFG ARTPFQFFCD FGGELRDAVT QGRRREFRKF ARFADPAAQA AIPDPNRPET
FLASRLDWSE AGAGALDQYR GLLKLRRETI VPRLRLIEPG SAAFEVVAGV LRVRWGLHDG
ASLQLTAHLS QEPLGEVALE GEVIFATSDA AAAGVLGPWS VVWTLAAAET QA
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