| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1159 |
|---|
| Symbol | |
|---|
| ID | 3673231 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiobacillus denitrificans ATCC 25259 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007404 |
|---|
| Strand | - |
|---|
| Start bp | 1212400 |
|---|
| End bp | 1214952 |
|---|
| Gene Length | 2553 bp |
|---|
| Protein Length | 850 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637709843 |
|---|
| Product | DNA mismatch repair protein MutS |
|---|
| Protein accession | YP_314917 |
|---|
| Protein GI | 74317177 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0249] Mismatch repair ATPase (MutS family) |
|---|
| TIGRFAM ID | [TIGR01070] DNA mismatch repair protein MutS |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0179722 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGATCG CGCCCGCGGC CCACACGCCG ATGATGCAGC AGTATCTCGG CATCAAGGCA
CAGCATCCCG ACATGCTGCT GTTCTATCGC ATGGGCGATT TCTACGAGCT GTTCTTCGAG
GACGCGGAGA AGGCCGCGCG GCTGCTCAAC ATCACGCTCA CGACGCGCGG CGCTTCGGCC
GGCAGCCCGA TCAAGATGGC CGGCGTGCCC TACCACAGCG CCGAGCAATA CCTGGCGCGC
CTGCTCAAGC TCGGTGAATC GGTCGTGATC GCGGAACAGG TCGGCGACCC GGCGGCATCG
AAAGGCCCGG TCGAGCGCCG CGTCAGCCGC GTCGTCACCC CCGGCACGCT GACCGACGCG
GGGCTTCTCG ACGAGACGCG CGACGCGCTG ATCATGGCGA TCGCCGTCGC CGGCGACGTG
CTGGGCGTGG CCTGGCTCAA CCTCGCTGCC GGCCGTTTCC AGGTCACCGA ACTCGACCGC
ACTGCGCTGC CCGCCCTGCT CGCGCGCGTG CGGCCGGCCG AGATCCTTGC GCACGAGCAC
CTCGACCTCG CTGCCGACTG TCCCGTGCGC CGGCTCGATG CTTGGCAGTT CGATGCGGAC
GGGGCAAGCA AGCGCCTCGC GCGACAGTTC GGCAGCTGCG ATCTCCAAGG CTTCGGCGTG
GCCGAAATGC ACTGCGCCAT TGCCGCCGCC GGCGCGCTGC TGGGCTACAT CGAGACGACG
CAGCGCACCG CCCTGCCCCA CCTTCTGTCG ATCCGCGCCG AGCGCGACAG CGACTTTGTG
CTGCTCGACG CGGCGACGCG GCGCAACCTC GAACTGACCG AGACGTTGCG CGGCGACGCG
GCGCCGACCT TGCGCTCGGT GCTCGATACC ACCTGCAGCG GAATGGGAAC GCGCCTGCTT
CGTCACTGGC TGCACCACCC CTTGCGCGAC CGCGCCGCCG TCGCCGCCCG TCGTGACGCG
ATCGGCGTGC TCGCCGCCGC GCCGGACAGC GCCGCCCGCC TCGCCGATCT GCTCAAACGC
TGCGCCGACG TCGAACGCAT CGGCGGCCGT ATCGCGCTGA AGAACGCACG GCCGCGCGAT
CTCTCCGGCC TGCGCGACAC GCTCGCCCTG CTCCCCGAAC TCGCCGCGGC GTTGCCCACC
GATGGTGCAC GCCTCGCCGC CTTGCGCGAC GCGGTCGCCG CCACACCCGA CGTGCACGCG
CTGCTGGTCC GCGCGATCCA GCCCGAGCCC GCCAGCGTGC TGCGCGAGGG TGGCGTGATC
GCCGACGGCT ACGACGCCGA ACTGGACGAA CTGCGGGCCT TGACGCGCGA TGCCGGCGCC
TTCCTGCTCG AACTCGAGAC CCGCGAACGT GCGCGCTCGG GCATCGCGAC ACTCAAGGTC
GAGTACAACA AGGTGCACGG CTTCTACATC GAAGTCGGGC GGGCACAGGC CGAGCGGGTG
CCGGACGACT ATCGCCGCCG GCAGACGCTC AAGAACGTCG AACGCTATCT GACGCCCGAG
CTCAAGGCCT TCGAGGACAA GGCCTTGTCG GCGCAGGAGC GCGCGTTGGC GCGGGAGAAG
GCCTTGTTCG AGGCCTTGCT CGACACGCTG ATCCCGCACG TCCCCAACCT GCTGTCGATC
GCGTCCGCCC TCGCCGAAAT CGACGTGCTG GCCAGCCAGG CGGAACGCGC GAGTACGCTC
AGGCTCTGCG CGCCCGAGTT CAGCGACGAC CCGTGCATCG TGATCCGCGG CGGGCGGCAT
CCGGTCGTTG AAGCACAGGT CGAGCATTTC ATTCCCAACG ACGTCGTCCT CAATCGCACG
CGCCAGATGC TCCTGATCAC GGGGCCCAAC ATGGGCGGCA AGTCGACCTA CATGCGTCAG
GTCGCGCTGA TCACGCTCAT GGCGTGCTGC GGCTTGTGGG TACCGGCAGC TTCGGCCAGG
ATCGGTGCCA TCGACCAGAT CTTCACCCGC ATCGGCGCGT CGGACGACCT GGCGGGCGGG
CGTTCGACCT TCATGGTCGA GATGACCGAG ACGGCGAACA TTCTGCACAG CGCGACCGCC
GACAGCCTCG TGCTGCTCGA CGAAATCGGC CGCGGCACCT CGACCTTCGA CGGCCTCGCC
CTCGCGTGGG CCGTCGCGCG TCATCTCGTC AGTGCGACCC GCGCGTTCAC GCTGTTCGCG
ACGCATTATT TCGAATTGAC CCAGCTCGCG CAGGAATACC GCCAACTCGC CAATGTTCAT
CTCGACGCCA AGGAACACGG CGCGGACCTG GTTTTCCTCC ACGCCGTCGA GGACGGCCCG
GCCTCGCAGA GTTACGGCAT CCAGGTCGCA CGGCTTGCCG GCGTGCCGGG CCCCGTCATC
CACGCGGCGC GGCGCCGTTT GCGCGAACTC GAAGACGCGC AATTGCAGCC GGGCCCGCAA
GGCGACCTGT TCGCCGCTCA CCTGCCCAGG GACGAAGCCC CGCCGCACCC GGCGCTCGAC
CAGCTGCGCG AACTCGACCC CGACACGCTC ACGCCCAAGG CCGCACTCGA CATGCTTTAC
GCATTGAAAG CCTTGACCGA CAGCGAACCG TGA
|
|---|
| Protein sequence | MSIAPAAHTP MMQQYLGIKA QHPDMLLFYR MGDFYELFFE DAEKAARLLN ITLTTRGASA
GSPIKMAGVP YHSAEQYLAR LLKLGESVVI AEQVGDPAAS KGPVERRVSR VVTPGTLTDA
GLLDETRDAL IMAIAVAGDV LGVAWLNLAA GRFQVTELDR TALPALLARV RPAEILAHEH
LDLAADCPVR RLDAWQFDAD GASKRLARQF GSCDLQGFGV AEMHCAIAAA GALLGYIETT
QRTALPHLLS IRAERDSDFV LLDAATRRNL ELTETLRGDA APTLRSVLDT TCSGMGTRLL
RHWLHHPLRD RAAVAARRDA IGVLAAAPDS AARLADLLKR CADVERIGGR IALKNARPRD
LSGLRDTLAL LPELAAALPT DGARLAALRD AVAATPDVHA LLVRAIQPEP ASVLREGGVI
ADGYDAELDE LRALTRDAGA FLLELETRER ARSGIATLKV EYNKVHGFYI EVGRAQAERV
PDDYRRRQTL KNVERYLTPE LKAFEDKALS AQERALAREK ALFEALLDTL IPHVPNLLSI
ASALAEIDVL ASQAERASTL RLCAPEFSDD PCIVIRGGRH PVVEAQVEHF IPNDVVLNRT
RQMLLITGPN MGGKSTYMRQ VALITLMACC GLWVPAASAR IGAIDQIFTR IGASDDLAGG
RSTFMVEMTE TANILHSATA DSLVLLDEIG RGTSTFDGLA LAWAVARHLV SATRAFTLFA
THYFELTQLA QEYRQLANVH LDAKEHGADL VFLHAVEDGP ASQSYGIQVA RLAGVPGPVI
HAARRRLREL EDAQLQPGPQ GDLFAAHLPR DEAPPHPALD QLRELDPDTL TPKAALDMLY
ALKALTDSEP
|
|---|
| |