| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1077 |
|---|
| Symbol | |
|---|
| ID | 3673770 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiobacillus denitrificans ATCC 25259 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007404 |
|---|
| Strand | - |
|---|
| Start bp | 1136104 |
|---|
| End bp | 1137450 |
|---|
| Gene Length | 1347 bp |
|---|
| Protein Length | 448 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637709760 |
|---|
| Product | transcriptional regulator |
|---|
| Protein accession | YP_314835 |
|---|
| Protein GI | 74317095 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2865] Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000000030584 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.489664 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGCTTTTGA ATGAGGATCA CTTTAACGAT GTAAAAAGCA AACGGATTCT TCCCGCAAAA
CTCCAGGAAA CGTTCGTCGC TTTCGCGAAC TCGGATGGCG GAGACTTGTA TGTTGGAATC
GAGGATAAAG CGCACACCGG TGAGCGTGTC GTAGGATTTG GCGAACAGGA AGAAGCAAAC
GCTATCGTCT CGACTTTGCT GGAAGAGACT CAGCCCGCAG TTGAAAATGT CTCCATTGAG
TTCCTCGATA CCGATGGTAA AGGCTTGGTG TTACATATTG GAATTCCCAA AAGTCCAAAA
GTCCACTACA CAGCTTCGGG CGATTGCTTT ATCCGAATTA ATGCTCAAAA AAGGAAAATC
AAAGGAGAAA GGATTACTCA GCTTGGGTAC TCCAAAGGGG CAGAGCCATA CGAACGGAAA
CCTGTTGCCG ATGTTGAACT TCAGGAGATC GCGCAAAGCG AAGAGCTCGC TGACTATATG
CGACGCGTTT CCACTCATCT CGAGCCAACA ATTTTTTTAA GGAAGCAAAG ACTCTTAACG
TCACATGACG GCACACGCAT TCCGAACGTT GGTTGTGTGC TCCTATTTGA TGAAGAACCC
CAGGCGACCC TGGAAACACG TTGTGCAGTT AAAGTCTACC GACTTCGAAC AACCGAGAAG
GAATATAAGA GAGAGCAGTT GGAAGAAATG CCTGTAACCA TCAACGGTGG CACGGAAGAA
GTAATTCGTA AAACAATTGA TCAAGTCGTG AAATATATTG ATGGGGCAGC GTTCCGGGAT
GGCGGCAAGC TTGTCAAGCT TAGGTACCCA GCAGAAGCCC TAAAAGAAAT ATTAGTTAAC
GCTGTAATTC ATCGCGACTA CAGCCTAAAC GACGATATCC ACGTTCGAAT ATTTGACAAC
CGAATCGAGG TTCAAAGCCC CGGAAAGCTA CCTGGATACA TGAGCCTAGA CAATCTTTAT
GAAGAACGCT TTTCGAGGAA TCCCAACCTC GTTAGGATGC TTCACAATCT TCCCAATCCA
GTAAACCACG ACATCGGTGA GGGTCTAGAC ACGGCCAAGA ATGAATTAAA AAAAGCAGGA
TTAGTTGAGC CCATCTTTGA AGAAAAAGAT AACGCTTTCC TTGTAACCAT CAAACATCAG
CGAATCGCTT CTGTTGAAGA AGTCGTACTG AGTTATCTCG AGGAAAATCC AGGTACTGAA
ATCACTAATA AACTTGTTCG TCAGTTGAGT GGTGAAGACG ACATGCAGAA GGTGAAATTG
GCACTTCAAA AGCTCAGGGC AGCCGGCCAT ATCGTGCCAC TTGACGAGAA TGCCAGCGCA
TTTAACTTTC GCTATGTGAA GGCATGA
|
|---|
| Protein sequence | MLLNEDHFND VKSKRILPAK LQETFVAFAN SDGGDLYVGI EDKAHTGERV VGFGEQEEAN
AIVSTLLEET QPAVENVSIE FLDTDGKGLV LHIGIPKSPK VHYTASGDCF IRINAQKRKI
KGERITQLGY SKGAEPYERK PVADVELQEI AQSEELADYM RRVSTHLEPT IFLRKQRLLT
SHDGTRIPNV GCVLLFDEEP QATLETRCAV KVYRLRTTEK EYKREQLEEM PVTINGGTEE
VIRKTIDQVV KYIDGAAFRD GGKLVKLRYP AEALKEILVN AVIHRDYSLN DDIHVRIFDN
RIEVQSPGKL PGYMSLDNLY EERFSRNPNL VRMLHNLPNP VNHDIGEGLD TAKNELKKAG
LVEPIFEEKD NAFLVTIKHQ RIASVEEVVL SYLEENPGTE ITNKLVRQLS GEDDMQKVKL
ALQKLRAAGH IVPLDENASA FNFRYVKA
|
|---|
| |