| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1042 |
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| Symbol | |
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| ID | 3671583 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | - |
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| Start bp | 1104886 |
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| End bp | 1108065 |
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| Gene Length | 3180 bp |
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| Protein Length | 1059 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637709725 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_314800 |
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| Protein GI | 74317060 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.192885 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCTTGATC GGGACGATCC CTGTCGCGTG CGCGACGCGG GGGACGCGAG CGGGCGCTAT
GAGGCGCATC AGCAGCTCGC GCTGCTCGAG ACCAGCGTCG CGCGACTGAA CGACATCGTA
CTCATCACCG AAGCCGATCA CGGGGGCGCC GCCGGGCCGG CGATCGTGTT CGTCAACGAC
GCGTTCGAAC ACATTACGGG CTATCGCCGC GACGAAGTGC TCGGCAAATC GGTGCGCTTG
CTGCATGGAC CGCTGACCGA CCGGGCCGAA GTGCGTCGCA TCGGTGAAGC GCTCGAGAAT
CAGCGGCCTG TGCGCAGCGA ACTCGTCAAT TACTCCAAGC ACGGCGAACC CTTCTGGCTC
GAACTCGACG TCGTGCCGGT GACCGATGCG AACGGCTACT ACACCCATTG CGTGGCGGTC
GAACGCGACG TCACCCGGCG CAAGGAAGCC GACCTCGAGC TCGCCCGCCT CAACCGCGCC
TTGCGCGTGC GCAGCGCCTG TAATAAGGCG CTGACCCGTG CGACCGACGA AGGTGAATTG
CTGCATGAGA TCTGCCGCGT CGCCGTCGAG CTGGGCGGCT ATCAGACGGC GTGGGTAGGA
TTCGCGCAGG ATGCGGCCGA GCGGTCGATC CGGCCCGTGG CCTGTGCCGG GGACGGCGCG
GACGCCTTCA ACGACAGCGC GGCGACGTGG TCCGACGAAC AGCTGATCGG AAACGGCCCC
TTCGGCCGCG CGCTGCGCGG CCGTCAGGTC GTGATCGTCG AGGATCTTCG AAACGCGCCG
GACCGCGAGC CCTGGGCCGC GGCGGCTTCC GCGCGCGGTT ACCGCAGCCT CGTCGTGCTG
CCGCTGCACG ACGCGGAACG CACCTACGGA ATATTTGCGC TGTTCGGCTC GGACGTGGCG
CGCGTCGCCT CCGACGAGAT GCGGCTGTTG CAGGAGCTGA CCGACGATCT GGCCTTCGGC
ATCGCCACCC TGCGCAGCCG TTGCGAGCAA CGCCGCACCC AGGAAGCGGT GTACAGGATC
GCCGCTGGCG TTTCCGCGAG CACCGGCACG GCCTTTTTCG ACGAACTGGT GCGCAACATG
ACCGCCGCCC TCGGCGCCGA GGCCGGCTTC ATCGCCCGCA TCCGGGCCGA CGATCCGGGA
TCTGCGACGA CCGTCGTCGC CTACGTCGAG GGCGAGCGGA TCGAGAATTT CGAGTACACG
CTCGTCGGCA CGCCGTGCGA ACAGCTCGCC AAAACGGCGA CGCACGTCAT TCCGAGGCGG
GTGAGCGAGC TGTTCCCCTG CACCGCACAC CTCAGCAAAC GGCGGGCGCA CGCCTATGTC
GGACACCGGC TGGTCGACTC GCGCGGACAA GCGATCGGGC AGCTCTTCGT GTTGTTCAGC
CGCCCGCTGC ACGAAACGGC TTTCATCACG TCGACCCTGC AGATCTTCGC CTCGCGGGTT
GCCGCGGAGC TCGAACGCCA GAGCGCAGAC GCGCATATCC GCCGTCAGGC GTCACTGCTC
GACAAGGCGC AGGACGCGAT CATGGTGCGC GGCCTCGACG ACGCGATCCG CTACTGGAAC
AAAGGCGCCG AGCGGCTGTA TGGCTGGAAA GCCGACGAGG TCACCGGGCG CTCGACAGAA
ATGCTGCTGT ACGGCGACCC GACGGCCTTC CGCGAAAACA CGCGGAAGGT CATCGCGCAC
AGCGAGTGGA ACGGTGAAAT CACGCAGCTG CGCAAGGATG GCACCGCGCT CGTCGTCGAG
GCCCACTGGA CGCTGCTGCG CGACGAAAAC GACCAGCCCG ACGCGATCCT CGCGATCAAT
ACCAACGTCA CCGAGCGCAA GGCCGCCGAG CACAAGGTTC ATCAGCTCGC GTTCTACGAC
CCTCTGACCG GGCTGCCGAA TCGCGAGCTA CTCGGCGATC GGCTGCAACA CGCGATGCAG
GTGCGCCACG GCCAGGTGGG AGCGCTGCTT CTGATCGACC TCGACAACTT CAAGACGCTC
AACGACACGC TCGGCCACGC GATGGGCGAC CTGCTGCTCC AGCAGATCGC GCAGCGCCTG
CAGACCTGCC TGCGCAAAGG CGACACGCTC GCACGCGTGG GCGGCGACGA ATTCGTCATC
GTGCTCGAAG GCCTGTCGGC GTCGCCGGGC GACGCCGGGT CGCTGGCGAC CCGCGTCGGC
GAAAAGATCC TCGCAAGCTT CGCCCGCCCC TTCCAGCTTG CGGACTATGT CCACCACTGC
ACGGCGAGCA TCGGCATCAC GCTCTTCAAC GATCGTCCGA CCACGCTGGA CGAATTGCGC
AAGCGCGCCG ATCTCGCGAT GTATCAGGCC AAGGCGCATG GTCGCAACGC GCTGCGCTTC
TTCGACCCGG CGATGCAGGC CGTGGTCGCC GCGCGGGCCG AGCTCGAGGT GGATCTGCGC
GAGGCGCTGA GGCTCGGCGC ATTCGAGCTG CATTACCAGG CCCAGGTCGA CGCCCGCGGC
TGCGTATCCG GCGCCGAAGC GCTGCTGCGC TGGCAGCATC CGCAGCGCGG CTGGATCGCG
CCGGCCTCCT TCATCCCGCT GGCCGAGGAA ACGGGCCTGA TCCTGCCGCT CGGCCTGTGG
GTGCTCGACG TCGCCTGCGC CCAGCTCGTC GCGTGGTCGA AGATGCCGCA CATGGCCCGA
CTGAGTCTCG CGGTCAACGT CAGCGCGCGC CAGTTCCGTC AGGCCGATTT CGCCGCACAG
GTGCTCGCGG CGATCGAGCG CTCGGGGGCC GACCCACGCC GGCTCAAGCT CGAATTGACC
GAGAGCCTGA TGCTAGACAA TCTCGACGAC ACCATTCTGA AGATGAGCGC GCTCAAGGCC
CATGGCATCG GCTTCTCGCT CGACGACTTC GGCACGGGCT ATTCGTCGCT CGCCTACCTG
AAGCGCCTGC CGCTCGACGA AATCAAGATC GACCAGTCCT TCGTCCGCGA CGTGCTGATC
GACGCCAACG ACGCGTCGAT CGCGCGCAGC ATTCTCGCGC TCGGACAGAG CCTGAATCTC
GAGGTGGTCG CCGAGGGGGT CGAGACCGAC GCCCAGCATG CCTTCCTCGC GGAACACGGC
TGCCAAGCCT ATCAAGGCTA TCTGTTCAAC CGGCCCCAGC CCGCGCGGCA ATTCGAAGCC
TGGGGCGCCG GGCACCCCTG CCCCGACGGC GGGGAAGAGA CAGGGCGCGC GCGCCTATAA
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| Protein sequence | MLDRDDPCRV RDAGDASGRY EAHQQLALLE TSVARLNDIV LITEADHGGA AGPAIVFVND
AFEHITGYRR DEVLGKSVRL LHGPLTDRAE VRRIGEALEN QRPVRSELVN YSKHGEPFWL
ELDVVPVTDA NGYYTHCVAV ERDVTRRKEA DLELARLNRA LRVRSACNKA LTRATDEGEL
LHEICRVAVE LGGYQTAWVG FAQDAAERSI RPVACAGDGA DAFNDSAATW SDEQLIGNGP
FGRALRGRQV VIVEDLRNAP DREPWAAAAS ARGYRSLVVL PLHDAERTYG IFALFGSDVA
RVASDEMRLL QELTDDLAFG IATLRSRCEQ RRTQEAVYRI AAGVSASTGT AFFDELVRNM
TAALGAEAGF IARIRADDPG SATTVVAYVE GERIENFEYT LVGTPCEQLA KTATHVIPRR
VSELFPCTAH LSKRRAHAYV GHRLVDSRGQ AIGQLFVLFS RPLHETAFIT STLQIFASRV
AAELERQSAD AHIRRQASLL DKAQDAIMVR GLDDAIRYWN KGAERLYGWK ADEVTGRSTE
MLLYGDPTAF RENTRKVIAH SEWNGEITQL RKDGTALVVE AHWTLLRDEN DQPDAILAIN
TNVTERKAAE HKVHQLAFYD PLTGLPNREL LGDRLQHAMQ VRHGQVGALL LIDLDNFKTL
NDTLGHAMGD LLLQQIAQRL QTCLRKGDTL ARVGGDEFVI VLEGLSASPG DAGSLATRVG
EKILASFARP FQLADYVHHC TASIGITLFN DRPTTLDELR KRADLAMYQA KAHGRNALRF
FDPAMQAVVA ARAELEVDLR EALRLGAFEL HYQAQVDARG CVSGAEALLR WQHPQRGWIA
PASFIPLAEE TGLILPLGLW VLDVACAQLV AWSKMPHMAR LSLAVNVSAR QFRQADFAAQ
VLAAIERSGA DPRRLKLELT ESLMLDNLDD TILKMSALKA HGIGFSLDDF GTGYSSLAYL
KRLPLDEIKI DQSFVRDVLI DANDASIARS ILALGQSLNL EVVAEGVETD AQHAFLAEHG
CQAYQGYLFN RPQPARQFEA WGAGHPCPDG GEETGRARL
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