| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1006 |
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| Symbol | |
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| ID | 3671229 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | + |
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| Start bp | 1073271 |
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| End bp | 1075463 |
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| Gene Length | 2193 bp |
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| Protein Length | 730 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637709687 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_314764 |
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| Protein GI | 74317024 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.43603 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0272546 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGATCGCCT ACCTGTGTGC TCCGCACGCG CTCGTGCTTC AGAAAGAGGC CAGCCACCGC
CTGCGCCCTA AAGTCTCTCG GCCCCGCACC CGTTATGTGA TCGGACGACT CCACTCTCAA
CGGGCTGCCG CGCATCCCGC CTCGACGTCC CCCCTAATGT TTCGATTAAG TCGCTATTAC
TCGATTGCCA GCCTCGTCGG CATATCGATC GTCGTGGTGG TGCTGTCCTG GTTTTACCGT
CAGCTGGCCA TCGAGACCCT GCTCGCACAC CAGACCCGTT CCAACGTCGA CCTGACCCGT
AGCTATGCGA ACGCGATCTG GCACCGGTTC GATGCATTCG TGTCGGCCTC GGGCGAGTGG
TCCGCAGAAG ATCTCAGGCG ACGGCCCGAG GTGGCATCCT TGCACGCCGC GACCTTGGCG
CAGATGCATG GCATGAATGT CGTCAAGGTC AAGGTGTACA ACCTGTCCGG GACGACGGTG
TACTCGTCCG AAGCCGGCCA GATCGGCGAG GATAAACACG ACAATCCGGG CTTTCTCAGC
GCGCGTGCCG GCAAGCCGGC GAGCGAAATC GTGTTTCGCG ACCAGTTTTA CGCCTTTGAG
GAGGTGATCG CCGATCGCAA TCTGATCGCG ACCTATCTGC CGATTCACGA GCACGGCAAC
GGGCCCGTCA AGGCCGTGTT CGAGGTGTAC ACGGACGTCA CGCCACTGGT CGCGAAAATG
GAGGCGACGC AGACGAAGAT CATCACGGGC GTCGTGCTGG CGCTGGCACT GCTTTACCTG
TTCCTGTTCT TGATCGTCCG CCGCGCCGAC CAGATCATCA CGCGACAGGA CCGGGAGCGG
CAGGACAACG AGCAGCGGAT CCGCCATCAG GCCTTCCACG ACTCGCTGAC GGGCCTGCCG
AACCGCAACA GTTTCTTGGA GCACATCTCC GAAGCGATCG ACCGGTCGAA ACGCTCAGGC
AACCCCGGCG CCTTGTTGTT CCTGGATCTC GACCGCTTCA AGCTGGTCAA CGACAGTCTT
GGCCACGATG CGGGTGATCA GTTGCTGCGG ATCACCGCTT CGCGGATTCA GAAATGCCTT
CGCGAGACCG ACATGGCCTT CCGCATGAGC GGGGACGAGT TCGTGGTCAT TCTTGAAAGC
GTGGACAAGG GCGAGCACGC CGCGCTGGCC GCGCAGCGCG TCATGCAGGA GATGGCTGTG
CCCATGTCGC TCAGCGGCTG CGAAGTGATC GTAAATGTCA GCATAGGCAT CACGACTTTC
GCTGGCGACA GCGCCGACGT TCAGGCCCTG CTGAAAGAAG CGGACTCCGC GATGTATCGC
GCCAAGCAGG TCGGCCAAAA CCATTACGAG TTCCATACGC CGGACATGAA CAGTGCCGCG
CATGAACGGC TATCGATGGA AACGGATTTG CAGCGCGCCC TGCAGAACCA GGAATTCGTC
CTGCATTACC AGCCAAAAAT CGACACCGCG ACGAAAGCGA TCGTCAGTGT CGAGGCGCTG
CTACGCTGGA ACCATCCCAC TCGCGGCCTG GTGCTACCGA ACACGTTCAT ACCCTTGCTG
GAGGATACCG GACTGATTAA CCCGGTCGGC GAATGGGTGC TGCTTCAGGC GGCCTGCCAG
GCGCAGGCCT GGATCGACGC GGGCCTGGAG CCGATACGCA TGTCCGTGAA CATTTCGGCC
AAGCAGTTCC GTAGCCACAT TCTTGTCGAG ACGGTACGAC GCACGCTCGG CGCGTCGCAA
CTCGAATCAC GCTATCTGGA GCTCGAACTT ACCGAGAGCA TGTTCATCGA GAACGCGGAA
CGCTCGATCC AGATAATGCA GGAATTGAAA TGTCTGGGTG TGAGTCTGTC CATCGATGAT
TTCGGTTCGG GGTATTCTTC GCTTGCCTAT CTCAAGCAGT TTCCGGTCGA CTACCTCAAG
ATCGACCGCT CGTTCGTCAC CGATCTGGTG TCCAACAAAA AGGATGCGGC CATCGCGGTG
GCGATCGCGG CGCTCGCGCA CAGCCTGGAC CTGAAGCTCG TGGCGGAAGG CGTCGAGGAT
CAGGCCCAGG TCGAGTTCCT CGAAAAACAG GGGTGCCATG AACTGCAGGG TTATCTGTTC
GGTCGCCCGG TTTCCGCCGA AGAACTGGAA CAGGTGCTAC GCCAAGCGGA CCGTGGACAA
GAGGCGCGGC GGCCGGTTGA CACGGCCGCG TAA
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| Protein sequence | MIAYLCAPHA LVLQKEASHR LRPKVSRPRT RYVIGRLHSQ RAAAHPASTS PLMFRLSRYY
SIASLVGISI VVVVLSWFYR QLAIETLLAH QTRSNVDLTR SYANAIWHRF DAFVSASGEW
SAEDLRRRPE VASLHAATLA QMHGMNVVKV KVYNLSGTTV YSSEAGQIGE DKHDNPGFLS
ARAGKPASEI VFRDQFYAFE EVIADRNLIA TYLPIHEHGN GPVKAVFEVY TDVTPLVAKM
EATQTKIITG VVLALALLYL FLFLIVRRAD QIITRQDRER QDNEQRIRHQ AFHDSLTGLP
NRNSFLEHIS EAIDRSKRSG NPGALLFLDL DRFKLVNDSL GHDAGDQLLR ITASRIQKCL
RETDMAFRMS GDEFVVILES VDKGEHAALA AQRVMQEMAV PMSLSGCEVI VNVSIGITTF
AGDSADVQAL LKEADSAMYR AKQVGQNHYE FHTPDMNSAA HERLSMETDL QRALQNQEFV
LHYQPKIDTA TKAIVSVEAL LRWNHPTRGL VLPNTFIPLL EDTGLINPVG EWVLLQAACQ
AQAWIDAGLE PIRMSVNISA KQFRSHILVE TVRRTLGASQ LESRYLELEL TESMFIENAE
RSIQIMQELK CLGVSLSIDD FGSGYSSLAY LKQFPVDYLK IDRSFVTDLV SNKKDAAIAV
AIAALAHSLD LKLVAEGVED QAQVEFLEKQ GCHELQGYLF GRPVSAEELE QVLRQADRGQ
EARRPVDTAA
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