| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0995 |
|---|
| Symbol | |
|---|
| ID | 3671218 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiobacillus denitrificans ATCC 25259 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007404 |
|---|
| Strand | - |
|---|
| Start bp | 1061004 |
|---|
| End bp | 1063292 |
|---|
| Gene Length | 2289 bp |
|---|
| Protein Length | 762 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637709676 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_314753 |
|---|
| Protein GI | 74317013 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.304607 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAAGGCGG ACAGTCTGTC GGTCAAGCAC GTCGCGCTCG CCTTCATCGC GGGGCTGCTC
GTGCTCGTCA GCCTGATCGG CGGATTTGCC GCCTACCAGA CCCGATCGGT CACGCGCAGC
CTGGAACTGC ACAACGAGAA TGCGGCACGC TCCGAACTCG TCGCGGCGGT CCAGCGACTG
CTGGACCAGA CCAAGGCCCA GGCCGACGCC CTCGCGCAAT GGGATGAGAC CCGCCAGCAA
CTGGTGTTGC CCGAGTACTA CACCTACTGG CGGGATCAGC GCGTCTACGA GAGCGGGATG
CTGCCGGCAC GTTTCACGCG CGCGGGCCTC TATACGCGCG GGCGCGCCCT GCTCGCGCCG
AACTCCTCGA AGAGCACGCT GCCGGCGGTG CTGCCAGCGG ACATCGCGCT CCACGAACGG
GCGAGCTGGC TCGCGAGCGA AAACGGCATG ACGGCGCTCT ATCACGCCTT CCCGGTCTAC
GGCGACGATC AGCGGGAATC CCTGCTCGGC TACGGTGTGA TCCGCGTCGA GTTCATGCCC
ATGCTGCTGA GTCAGGATCG GCTGTATTTC GTCGACGTTC CGAGCGTGAA ACTGGCGCTG
AAACCGGGCG AAGTGCTGCC CGCCTCGCAG CTCTTCTCGC ACCTGCGCTA CAGCGCACGC
CCCGATCCCG AGCAGAAGCG CTTCCAGACG ATCCTGTCGC GCACACTGCT GGCGCTTTTC
GCGCTCCTGC TGCTTACCGC GCTGCTCGGT TTCGTCGCGT ACAACCGGCT GCTGGTACGT
CCCCTGCGAC ACCTGTCGAA GGACATCGAC GCCATGCAGC AGGGCCGTTT CAGCGCCCAG
CCGGCCCGCT TCGAGTCGAT GCGGATCCGC GAGCTCGAGA ACATCCGCCG GTCACTCTAC
GACTATCAGT TGCAGCTGCG CGAACTGCAC GGCTCGCTCG AAGACCAGAA TCGCGAGTTT
CATTCGCAGG CGCGCCAGGA CGCCCTTACG GGCTGCCACA ACCGTCGCGC CTACGAGGAG
GACTGGGAGA CCTTCCGTCG CGACCTCAAG AACGCACCGC AGGGCGTCGC CTTCCTGCTC
TTCGACTGCG ACCGCTTCAA GGCCATCAAC GATACCTACG GCCATGCCAA AGGCGACCGC
GTGCTGACGA TCATCGCCGA CGCGCTGGTC ATGGCCCTGC GCGCCAACGA CCGCCTGTAT
CGCCTCGGCG GCGACGAGTT CGCGACCTTT CTTTCGCGCA CGACGCCCGG CCAGGCGAAG
CAGATCGCGC AGCGCTGCCA GAGCCTGCTC GACGCGTCGG CCTTCAGCGA GCTCGGCATC
AGCGAGCCGG TCGGCATCAG CATCGGCATC GCGTTCTGCG GACCCGAGCA CGCCGAGCAG
ATCGACGAGT TGCCCAAGCA CGCCGACATC GCGATGTATA CCGCCAAGCA GCCGGGGCGC
AACCGCATCG CGCTTTATGG CGAAGACACC GAGCGCGCGG CGCAGGCGCT GGTCGCGAGC
CGGGAAACCA ACGCCCTGTT CCAGGCATTG TCGACCCCCG GCATGGTGGA GATGCATTAC
CAGTCGATCC ACAGCCTGCC GGGACGCAAG ATCGATTATT ACGAGGCCCT CGCGCGCATC
CGCTACAACG GCGAACTGAT CATGCCGGAC GCCTTTCTTC CGGTCATCAA CAACCGCCGC
CTCGAAACCG AGTTCGACCT TGCGGTGCTC GCCCAGGTCG ACGCCGATCT CTCCTCGCAA
CGGCTGCCGG CCGGAATCGG CATCTCGTTC AATCTCTCGG CGCAAAGCCT GTCGCGTGCC
GAGGTCGTCT CGCTCCTGCT CGAATTGTCG CGCCACATTC CGCGCCATCC GCTCATGCTC
GAGATCACCG AAACCTCGCT GATCACGCAG ATGGCCGAGG TCAGCACCTA TCTCGACCTG
CTGCGCACCG TGCACTACCG AATCGCGATG GACGATTTCG GCACCGGTTA CTCGCCGCTG
CGCTATCTGG TCGACCTGCC GGTCGACGTG GTGAAGTTCG ACATTTCGCT GGTCAGCAAG
CTCGCCCAGG ACAATCGGGC GGGCCAGGTC GTCGCAGATT TCGCCCGCAT GATGAGCGAA
GCCGGCTATT CACTGGTCGC CGAGGGCGTC GAGACCGACG CCGTTCTGCG CAAGGTGGAA
AGCCTCGGCG TCGAGCACGT GCAGGGCTAT CTCCTGAGCC GGCCCCTGCC GCTCGACAAA
CTGGCGAACG CGGGCGCCGC GCAGGAGCGC GTCGCCGAAT CCGCCGAGGT CGCGTCAGTG
CTTCCCTGA
|
|---|
| Protein sequence | MKADSLSVKH VALAFIAGLL VLVSLIGGFA AYQTRSVTRS LELHNENAAR SELVAAVQRL
LDQTKAQADA LAQWDETRQQ LVLPEYYTYW RDQRVYESGM LPARFTRAGL YTRGRALLAP
NSSKSTLPAV LPADIALHER ASWLASENGM TALYHAFPVY GDDQRESLLG YGVIRVEFMP
MLLSQDRLYF VDVPSVKLAL KPGEVLPASQ LFSHLRYSAR PDPEQKRFQT ILSRTLLALF
ALLLLTALLG FVAYNRLLVR PLRHLSKDID AMQQGRFSAQ PARFESMRIR ELENIRRSLY
DYQLQLRELH GSLEDQNREF HSQARQDALT GCHNRRAYEE DWETFRRDLK NAPQGVAFLL
FDCDRFKAIN DTYGHAKGDR VLTIIADALV MALRANDRLY RLGGDEFATF LSRTTPGQAK
QIAQRCQSLL DASAFSELGI SEPVGISIGI AFCGPEHAEQ IDELPKHADI AMYTAKQPGR
NRIALYGEDT ERAAQALVAS RETNALFQAL STPGMVEMHY QSIHSLPGRK IDYYEALARI
RYNGELIMPD AFLPVINNRR LETEFDLAVL AQVDADLSSQ RLPAGIGISF NLSAQSLSRA
EVVSLLLELS RHIPRHPLML EITETSLITQ MAEVSTYLDL LRTVHYRIAM DDFGTGYSPL
RYLVDLPVDV VKFDISLVSK LAQDNRAGQV VADFARMMSE AGYSLVAEGV ETDAVLRKVE
SLGVEHVQGY LLSRPLPLDK LANAGAAQER VAESAEVASV LP
|
|---|
| |