| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0968 |
|---|
| Symbol | prfC |
|---|
| ID | 3672760 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiobacillus denitrificans ATCC 25259 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007404 |
|---|
| Strand | - |
|---|
| Start bp | 1030200 |
|---|
| End bp | 1031831 |
|---|
| Gene Length | 1632 bp |
|---|
| Protein Length | 543 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637709647 |
|---|
| Product | peptide chain release factor 3 |
|---|
| Protein accession | YP_314726 |
|---|
| Protein GI | 74316986 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG4108] Peptide chain release factor RF-3 |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00503] peptide chain release factor 3 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.977047 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAATCCG CTTCCCCCGC ACCGGCCCAG GCCGGCGACC CGGCCCTTGC GCGCGACGTC
AAGAAGCGCC GCACGTTCGC GATCATCTCC CACCCGGACG CCGGCAAGAC GACGCTGACC
GAAAAGCTGC TGCTGTTCGG CGGCGCGATC CAGATGGCCG GCACGGTCAA GGCGAAGAAG
AGCGGCAAGT TCGCCACCTC GGACTGGATG GCGGTCGAAC AGGAGCGCGG CATCTCGGTC
GCCTCGTCGG TCATGCAGTT CTCCTACGGC GACTGCGTGT TCAACCTGCT CGACACGCCG
GGCCACAAGG ACTTCTCGGA AGACACCTAT CGCGTGCTGA CCGCGGTCGA CGCGGCGATC
ATGGTCGTCG ACGCCGCGAA GGGCGTCGAA GAACAGACGA TCAAGCTGCT CGAAGTCTGC
CGACTGCGCG ACACGCCGAT CATCACCTTC ATCAACAAGC TGGACCGCGA GGTGCGCGAG
CCGCTCGAGC TGTTGGACGA GATCGAGTCG ATCCTGAAGA TCCACTGCGC GCCAGTGACC
TGGCCGATCG GCATGGGCAA GCGCTTCCAG GGCGTGTATC ACCTGATCCA CGACGAGATC
CTGCGGTTCA AGGCAGGCGA GGAAAACGCG GGCCAGCAGT TCGAGTCGCT GCAGGGCCTC
GGCGACGCGA AGCTGCGCGA GCTCTTTCCG CTCGAGGCCG ACGCGCTGCT GTCCGAGATC
GAACTCGTTC GCGGGGCCGG CGCGGCCTTC GACCTGGCAG ACTTTCTCGC TGGCCGCCAG
ACGCCCGTGT TCTTCGGCTC CGGCATCAAC AACTTCGGCG TGCGCGAGGT GCTGCGCGCA
CTGTCGGACT GGGCGCCCTC GCCACTGCCG CGCGATGCGG TCGAGCGCAC GGTCGAGCCG
ACCGAACCGA AGTTCACCGG TTTCGTCTTC AAGATTCAGG CCAACATGGA CCCGCAGCAC
CGCGACCGCA TCGCGTTTTT CCGCGTCTGC TCTGGCCGCT ATTCGCCGGG TATGAAGGTG
CGCCACCGGC GCACCGGCAA GGACATGAAG ATCGCCAACG CGGTCGTGTT CATGGCCAAC
GAGCGGCAGC GCTCGGACGA CGCCGTCGCG GGCGACATCA TCGGCATCCA CAACCACGGC
CAGCTGCAGA TCGGCGACAC GCTGACCGAA GGCGAGGCGC TGCAGTTCAA GGGCATCCCC
TACTTCGCGC CCGAATTGTT CTCCAAGCCG CGGCTCCGCG ATCCCTTGCG CGCCAAGCAG
CTCAACAAGG GCCTGCTCGA ACTCGGCGAG GAAGGCGCGG TGCAGGTGTT CGAGCCCTTC
GCCGACAACA CGCTCTTGAT CGGCGCAGTC GGCCCGCTGC AGTTCGAGAT CGTCGCGCAC
CGATTGAAGA CCGAATACGG CGTCGACGCG AGCTTCGAGA ACGCGGGGAT TCACACGGCG
CGGTGGGTCA CCTGCCCCGA CGCCCAGCAC CTCGCCGAAT TCACCAAGGC CAATTCGCTG
CGGCTCGCCA AGGACGTCGA CGGCAATCTC GTGTATCTGG CCGACACGCG CGTGAACCTC
ACCCTCGCCC AGGAACGTTG GCCCAAGGTC GCGTTCCACG ACACGCGCGA GCACGGACAG
CTCCTGACTT GA
|
|---|
| Protein sequence | MESASPAPAQ AGDPALARDV KKRRTFAIIS HPDAGKTTLT EKLLLFGGAI QMAGTVKAKK
SGKFATSDWM AVEQERGISV ASSVMQFSYG DCVFNLLDTP GHKDFSEDTY RVLTAVDAAI
MVVDAAKGVE EQTIKLLEVC RLRDTPIITF INKLDREVRE PLELLDEIES ILKIHCAPVT
WPIGMGKRFQ GVYHLIHDEI LRFKAGEENA GQQFESLQGL GDAKLRELFP LEADALLSEI
ELVRGAGAAF DLADFLAGRQ TPVFFGSGIN NFGVREVLRA LSDWAPSPLP RDAVERTVEP
TEPKFTGFVF KIQANMDPQH RDRIAFFRVC SGRYSPGMKV RHRRTGKDMK IANAVVFMAN
ERQRSDDAVA GDIIGIHNHG QLQIGDTLTE GEALQFKGIP YFAPELFSKP RLRDPLRAKQ
LNKGLLELGE EGAVQVFEPF ADNTLLIGAV GPLQFEIVAH RLKTEYGVDA SFENAGIHTA
RWVTCPDAQH LAEFTKANSL RLAKDVDGNL VYLADTRVNL TLAQERWPKV AFHDTREHGQ
LLT
|
|---|
| |