Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tbd_0956 |
Symbol | rpsA |
ID | 3672748 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiobacillus denitrificans ATCC 25259 |
Kingdom | Bacteria |
Replicon accession | NC_007404 |
Strand | + |
Start bp | 1018524 |
End bp | 1020245 |
Gene Length | 1722 bp |
Protein Length | 573 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637709635 |
Product | 30S ribosomal protein S1 |
Protein accession | YP_314714 |
Protein GI | 74316974 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0539] Ribosomal protein S1 |
TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000014577 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTACTG CTACCGCTTC TTCCGCTCCC GCCTCCATGG AAAGCTTCGC CGCGCTGTTC GAGGAGTCGC TCTCGCATCA GGAGATGCGT CAGGGCGAGG TCATCACCGC CGAGATCGTC GGCATCGACC ACAACTTCGT GACCGTGAAC GCCGGCCTCA AATCCGAGAG CCTGATTCCG CTCGAAGAAT TCAAGAACGA CCAGGGCGAA GTCGAAGCCA AGGTCGGCGA TTTCGTTTCC GTCGCCATCG AATCGATCGA AGACGGCTTC GGGGCGACCA AGCTGTCGCG CGAGCGTGCG AAGAAACTGG CAGCGTGGCT CGACCTGGAA GCGGCCATGA ACGAAGGCCG CGTCGTTTCG GGCATGGTGC AGGGCAAGGT CAAGGGCGGC CTGACGGTGC TGGTCGGCGG CCTGCGCGCT TTCCTCCCGG GTTCGCTGGT CGACATGCGC CCGGTCAAGG ACACCACGCC CTACGAATAC AAGGAAATGG AGTTCAAGGT CATCAAGCTC GACCGCAAGC GCAACAACGT CGTCGTGTCG CGCCGTGCCG TGCTCGAAGA GACCATGGGC GCCGATCGGG AAGCGCTGAT GGAAAGCCTG AAGGAAGGCT CGATCGTCAA GGGCGTCGTC AAGAACATCA CCGACTACGG CGCGTTCGTC GACCTCGGCG GCATCGACGG CCTGCTCCAC ATCACCGACA TGGCGTGGCG CCGCGTCAAG CATCCGACCG AAGTCGTGCA CGTCGGCCAG GAGCTCGAAG CCAAGATCCT GCGCTACGAC ACCGAGAAGA ACCGCGTTTC GCTCGGCCTG AAGCAGCTCG GCGACGATCC GTGGGTCGGC ATCGCACGCC GTTACCCCCA GGGCACCCGC ATGTTCGGCA AGGTCGCGAA CCTGACCGAC TACGGTGCGT TCGTCGAGAT CGAAGAGGGC ATCGAAGGTC TGGTCCACGT TTCCGAAATG GACTGGACCA ACAAGAACGT CAGCCCGTCG AAGATCGTGC AGCTCGGCGA CGAAGTCGAA GTCATGGTGC TCGACATCGA CGAGGACAAG CGCCGCATCT CGCTCGGCAT GAAGCAGTGC AAGTCGAACC CGTGGGAAGA CTTCGCGATG AACCACAAGA AGGGCGACAA GGTCTCCGGC GCGATCAAGT CGATCACCGA CTTCGGCGTG TTCATCGGCT TGCCTGGCGG CATCGACGGC CTCGTCCACC TGTCCGACCT GTCGTGGAGC GTGCCTGGCG AAGAAGCCGT GCGCAACTTC CGCAAGGGCC AGGACGTGGA AGCCGTGGTG CTCGGCATCG ATCTCGAGCG CGAGCGCATC TCGCTCGGCA TCAAGCAGCT CGAAGGCGAT CCGCTGACCA GCTACGCGAC CGGCCACGAG AAGGGCAGCA TCGTCAAGGG CACGATCAAG ACCGTTGAAG CCAAGGGCGC CACCGTCAAG CTCGACAGCG ACATGGAAGG CTATCTGCGT GCCTCCGAAG TCTCGCGTGA CCGCGTCGAA GACATGCGCA GCCACTACAA GGAAGGCGAC GAAATCGAAG CCATGATCAT CAACGTCGAT CGCAAGAACC GCGTGATCAA CTTGTCGATC AAGGCCAAGG ACATGACCGA GCAGGACGCG GCGATGAAGA AATTCGCAGC CGAATCCGCT GCGGCCGCGA GCGGCTCGAC CAATCTGGGA GCGCTGCTGA AGGCCAAGCT CGACAACAAG AACGCTGAGT AA
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Protein sequence | MSTATASSAP ASMESFAALF EESLSHQEMR QGEVITAEIV GIDHNFVTVN AGLKSESLIP LEEFKNDQGE VEAKVGDFVS VAIESIEDGF GATKLSRERA KKLAAWLDLE AAMNEGRVVS GMVQGKVKGG LTVLVGGLRA FLPGSLVDMR PVKDTTPYEY KEMEFKVIKL DRKRNNVVVS RRAVLEETMG ADREALMESL KEGSIVKGVV KNITDYGAFV DLGGIDGLLH ITDMAWRRVK HPTEVVHVGQ ELEAKILRYD TEKNRVSLGL KQLGDDPWVG IARRYPQGTR MFGKVANLTD YGAFVEIEEG IEGLVHVSEM DWTNKNVSPS KIVQLGDEVE VMVLDIDEDK RRISLGMKQC KSNPWEDFAM NHKKGDKVSG AIKSITDFGV FIGLPGGIDG LVHLSDLSWS VPGEEAVRNF RKGQDVEAVV LGIDLERERI SLGIKQLEGD PLTSYATGHE KGSIVKGTIK TVEAKGATVK LDSDMEGYLR ASEVSRDRVE DMRSHYKEGD EIEAMIINVD RKNRVINLSI KAKDMTEQDA AMKKFAAESA AAASGSTNLG ALLKAKLDNK NAE
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