Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tbd_0935 |
Symbol | |
ID | 3672726 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiobacillus denitrificans ATCC 25259 |
Kingdom | Bacteria |
Replicon accession | NC_007404 |
Strand | + |
Start bp | 993599 |
End bp | 995539 |
Gene Length | 1941 bp |
Protein Length | 646 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 637709614 |
Product | hypothetical protein |
Protein accession | YP_314693 |
Protein GI | 74316953 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.002395 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGCCTC TTTACGAGGC TATCTCGAAT GCCGTCGATG CAATCGAGGA GCATCAGGAC GGCTTCAGCA ATCATTCGAT TCGCATCCGG CTGGTGGCCT CCAACGACCT CGCCCATCAA GCTGGGGACG GGACTCTGGT CGTGGACGGC TTCGATGTCA TTGATGATGG CGTTGGCTTC AACGACAAGA ACCTGGCTTC GTTTCAAGAG GCGCACACGC TTTCAAAGGT CAAGGTCGGC GGCCGAGGTG TCGGGCGCTT CACTTTCCTG AAAGTCTTTT CATCCGTACA CATCCGCAGT GTCTTCAAAC GCGACGGCAA GGCTTTGCTG CGAGAGTTCG ACTTCAGCAT CCAAGATGAA CTGAAAGGTG CGGACACCAC GTCTGAAGTC AAAGAGGCAT GTGGCACGCA TACCTCTTTG CGGGGCATGG ATGAAAAGTT TCGGGCTGGA TGGCCTACCC AGCCCGAAAC CATCGCTGAA CGCATCATTG CGCACTTCCT GATCCGGTTT GCGGCTCGCT CCTGCCCTCC TATGACTCTG GAGTCTCCGG GACACGCTTC GATTGACTTG CACGCCCTGT TTCAGTCAAC AGTGCTGGCG CACATCCAAG AACAGTTCTT CGAGGTTTCG GGGCATACAT TTGCCTTGCA GGCATATCGT CACCGAGACG GACGCTCGCG CCACGAACTC AACTTGTGTG CGAACGGGCG CGAAGTCACC ACGAGCAAGC TGCGAGACCT GCTTCCAGAG CTTCCCGAAA AGCTGATTGA CGAAGACCAA GCGCCGTACA CCTTGATCGT GCTGGTCACC GGGGAGTACC TGGACGACCA TGCCAACCAA GAGCGCACGC GCATCGCCTT CCAAAGCGAT GAGGAGCCCG AGCTTGAGCA GACCCTCGTC TCCCGACGCG CCCTGAACCA GGGTGTCGCA GGGGCGTTGC GGCCGCTGCT CCTGGACGAT TTGAAGTCAA CGAACGAAGA AAAGCGCGCC CAGATCGAGA AGTTCGTGGA GCAAGCCCCC GAGTACAGGG CGCTCACGCA CCCTCGCTAC AAGGAGATGA TCGAGCAGAA GATTCAGCCA GGCCTGTCTG AAGACAAGCT GGACGAAGCG CTATTGCACG TCAAACGAGA AATTGAAGAT GGAGTACGCA AGGATTTGCG GCACGTTGCG GCCAACTTCG AAAGTCAGTC GTTCGAGCAG TACGCAGAGA TGTTTCAGAA GCTGGCCGAA CAAGCAAATG AGCTTGGCAA AGCTGAGCTT GCAAAGTACG TCACCCATCG CCGCACCATT CTTGATCTGG TATCGCTTAG CTTAAAAAAG AGGCGGTCAG ACGATAAGTA TCCGCTGGAA CGCGTACTTC ACAAGATGCT TTTCCCGATG GGCGTCACTT CCAAAGATAT CTTCTTTGAG CAGCAGAATT TGTGGGTGAT TGATGAACGG CTTTGCTATC ACACACTGCT AACGTCCGAT AAAAAGTTGA ACTCCATAGA CGGCCTTGAA GATACGTCCG GTAAGGAGCC GGATATTTGC TCCTTTTTCT ACGACACCCC GATCGGGGTG CGGGAGCAGG AAGATTCCAC GGGCTCAATT GTCGTGATCG AGTTCAAGCG ACCGGGGCGT GACGATTACC AAGCGGACCC TGCCCAGCAA GTCATTAAGA GATTTGTTGA AATTCAAGAG AGCAAGCTGG ACGACGTTGA TGGCAGGCCG ATTAATGCAC GCGGAATTCG CTTCTTTGGC TATTTGATAG CTGACTTGAC GCCATCGCTC AAGCGGGAAA TGCGAATGAA CTATCACGAG TCCATTGATG GCGAAGGCTA TTTCAAAACG CTCACGGGCG GAAATGGCTA CGTAGAAATC ATCTCTTACG ACAAGCTCCT CAAAGATGCC GCGCGCAGAA ACCGCGTGCT ATTTGAGAAG CTTGGCCTGC ACAAGAATTA A
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Protein sequence | MMPLYEAISN AVDAIEEHQD GFSNHSIRIR LVASNDLAHQ AGDGTLVVDG FDVIDDGVGF NDKNLASFQE AHTLSKVKVG GRGVGRFTFL KVFSSVHIRS VFKRDGKALL REFDFSIQDE LKGADTTSEV KEACGTHTSL RGMDEKFRAG WPTQPETIAE RIIAHFLIRF AARSCPPMTL ESPGHASIDL HALFQSTVLA HIQEQFFEVS GHTFALQAYR HRDGRSRHEL NLCANGREVT TSKLRDLLPE LPEKLIDEDQ APYTLIVLVT GEYLDDHANQ ERTRIAFQSD EEPELEQTLV SRRALNQGVA GALRPLLLDD LKSTNEEKRA QIEKFVEQAP EYRALTHPRY KEMIEQKIQP GLSEDKLDEA LLHVKREIED GVRKDLRHVA ANFESQSFEQ YAEMFQKLAE QANELGKAEL AKYVTHRRTI LDLVSLSLKK RRSDDKYPLE RVLHKMLFPM GVTSKDIFFE QQNLWVIDER LCYHTLLTSD KKLNSIDGLE DTSGKEPDIC SFFYDTPIGV REQEDSTGSI VVIEFKRPGR DDYQADPAQQ VIKRFVEIQE SKLDDVDGRP INARGIRFFG YLIADLTPSL KREMRMNYHE SIDGEGYFKT LTGGNGYVEI ISYDKLLKDA ARRNRVLFEK LGLHKN
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