Gene Tbd_0896 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTbd_0896 
Symbol 
ID3672687 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiobacillus denitrificans ATCC 25259 
KingdomBacteria 
Replicon accessionNC_007404 
Strand
Start bp944968 
End bp946764 
Gene Length1797 bp 
Protein Length598 aa 
Translation table11 
GC content69% 
IMG OID637709575 
ProductATP-dependent DNA helicase RecQ 
Protein accessionYP_314654 
Protein GI74316914 
COG category[L] Replication, recombination and repair 
COG ID[COG0514] Superfamily II DNA helicase 
TIGRFAM ID[TIGR00614] ATP-dependent DNA helicase, RecQ family
[TIGR01389] ATP-dependent DNA helicase RecQ 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCGAAA CCCCTTTAAG CCTCCTCAAC CGCGTCTTCG GCTATCCCGC GTTCCGTGGT 
GAGCAGGCCG CGATCGTCGA TACGGTCGTC GCCGGCGACG ATGCGCTGGT GCTGATGCCG
ACGGGCGGCG GCAAGTCGCT GTGCTACCAG ATCCCCGCGC TGTTGCGCGA AGGCTGCGCG
GTCGTCGTCT CGCCGCTGAT CGCGCTTATG CAGGACCAGG TCGCGGCGCT GCAGGAGTTG
GGCATCGCCG CCGCCTTCCT GAATTCGAGC CTCGACGGCG CCACCGCCGC GCGGGTCGAG
CGCGATTTCG TTTCGGGGCA GTTGAAGCTG CTCTACGTCG CCCCCGAGCG CCTGTTGACG
CCGCGTTTTC AGAGCCTGCT CGCCGAGGCA CGCATCGCGT TGTTCGCGAT CGACGAGGCG
CACTGCGTGT CGCAATGGGG CCACGACTTC CGCCCGGAAT ACCTCGGCCT GTCGGCGCTG
CACGAACGCT TCCCCGAGGT GCCGCGCATC GCGCTGACCG CGACGGCCGA CGCCGCGACG
CGCGCCGAAA TCCTGCAACG CCTTGATCTA GGCGCCGCGC GCGTCTTCGT CGCGAGTTTC
GACCGCCCCA ACATCCGCTA CCGTATCGCC GAGAAAACCG AGCCGCGCCG GCAACTGCTC
GACTTCCTCG CCGAACACAC AGGCGAGGCC GGCATCGTCT ATTGCAGCAC GCGCAAGAAA
GTCGAAGAAA CCGCCGACGC GCTGAAGCAG GCCGGCCTCA CGGCGCTGCC GTATCACGGC
GGCATGGACA ACGACACGCG TCGCCGCCAT CAGGAAAAAT TCCTGCGCGA GGAGGGCGTC
GTCATGGTCG CGACGCTCGC GTTCGGCATG GGCATCGACA AGCCCGACGT GCGCTTCGTC
GCCCACCTCG ACCTGCCGCG CTCGGTCGAG GGCTACTACC AGGAAACCGG CCGCGCCGGC
CGCGACGGCG AGCCGGCCGA GGCGTGGATG GCCTGGGGCC TGCAGGACGT CGTCACCCAG
CGCCGCTTCA TCGATGAAGG CGAGGCCGGA GACGCGCACA AGCGCATCGG CCACGCCAAG
CTCGACGCCC TGGTCGGCCT GTGCGAAGCG GCCAGCTGCC GCCGCGTCGC GCTATTGAGC
TACTTCGGCG AAGCCAGCCA GCCCTGCGGC AACTGCGACG TCTGCCTCAA TCCGCCCACG
CTGTGGGACG GCACCGAGGC CGCACAGAAA TTGTTAAGCA CCGTCTACCG CACCGGCCAG
CGCTTCGGCG CCGGGCACGT GATCGACGTG CTGCTCGGCA AGACGACCGA GAAGATCGAC
CGCTTCGGCC ACAGCCAGCT GAGCGTGTTC GGCATCGGCG CCAGCCAGAC CGACAAGGTG
TGGCGCGCCG TGCTGCGGCA GCTGGTGGTG CGCGGCCTGC TGGAGGTGGA CCACAGTGCC
TACGGCGCGC TCAAGCTCAC CCAAGCCGCG AAGCCCGTGC TCAAAGGCGA GGAAACCGTG
ATGCTGCGCG CCATCGAAGC GCGCCCGGCG CGCAAGAAAT CGCGCCTCGC CCCCAGTTCC
GGCGCCGGCG TCCACGACGA CGAAGACCCG CTGTTCCTCT CCCTGCGCGC CTGGCGCCGC
GAAACCGCCA ACGAAAAGGG CGTGCCCGCC TACGTCATCC TGCACGACGC CACGCTGCGC
GAGATCGCCG CGCGCCGCCC CGCCACGCTG GCCGAGCTGG GCGAGATATC CGGGCTGGGG
ACGAAGAAGC TGGAAGCATA CGGCGAGGAC GTGTTGGCGG TGGTGGCGGA GGGGTGA
 
Protein sequence
MPETPLSLLN RVFGYPAFRG EQAAIVDTVV AGDDALVLMP TGGGKSLCYQ IPALLREGCA 
VVVSPLIALM QDQVAALQEL GIAAAFLNSS LDGATAARVE RDFVSGQLKL LYVAPERLLT
PRFQSLLAEA RIALFAIDEA HCVSQWGHDF RPEYLGLSAL HERFPEVPRI ALTATADAAT
RAEILQRLDL GAARVFVASF DRPNIRYRIA EKTEPRRQLL DFLAEHTGEA GIVYCSTRKK
VEETADALKQ AGLTALPYHG GMDNDTRRRH QEKFLREEGV VMVATLAFGM GIDKPDVRFV
AHLDLPRSVE GYYQETGRAG RDGEPAEAWM AWGLQDVVTQ RRFIDEGEAG DAHKRIGHAK
LDALVGLCEA ASCRRVALLS YFGEASQPCG NCDVCLNPPT LWDGTEAAQK LLSTVYRTGQ
RFGAGHVIDV LLGKTTEKID RFGHSQLSVF GIGASQTDKV WRAVLRQLVV RGLLEVDHSA
YGALKLTQAA KPVLKGEETV MLRAIEARPA RKKSRLAPSS GAGVHDDEDP LFLSLRAWRR
ETANEKGVPA YVILHDATLR EIAARRPATL AELGEISGLG TKKLEAYGED VLAVVAEG