Gene Tbd_0893 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTbd_0893 
Symbol 
ID3672684 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiobacillus denitrificans ATCC 25259 
KingdomBacteria 
Replicon accessionNC_007404 
Strand
Start bp942698 
End bp944203 
Gene Length1506 bp 
Protein Length501 aa 
Translation table11 
GC content65% 
IMG OID637709572 
Productlysyl-tRNA synthetase, class-2 
Protein accessionYP_314651 
Protein GI74316911 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1190] Lysyl-tRNA synthetase (class II) 
TIGRFAM ID[TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGACC CCACCAACGC CCCCGCCCTC GACGAAAACC AGATCATCGC CGAGCGCCGC 
GCCAAGCTCG CCGCGATCCG CGAGGCGGGC GTCGCCTTCC CCAACGACTT CGAGCGCCGC
GACTACGCCG GCAGGCTCGC GCACGAACAC GGCGACAAAT CCAAGGAAGC GCTCGAAGCC
GAGGCCGTCG ACGTGCAGCT GGCGGGCCGC ATGATGCTCA AGCGCGTGAT GGGCAAGGCG
AGCTTCGCGA CGCTGCAGGA CATGAGCGGC CGCATCCAGG TCTACGTCTC GAACGACCTG
ACCGGGCTCG ACGCGCACGA GGCGTTCAAG CGCTGGGACC TCGGCGACTT CGTCGGCGTG
AGCGGCACGC TGTTCAAGAC CAACAAGGGC GAACTGACGA TCCAGGCAAA ATCGGTCCGC
TTGCTGTCGA AGGCGCTGCG TCCGCTGCCG GAAAAATTCC ACGGGCTCGC GGACCAGGAA
CAGAAGTACC GCCAGCGCTA TCTCGACCTC ATCACCAACG ACGACGCGCG GTCGACCTTC
GTGCGCCGCT CGAAGATCAT CCAGGCGATC CGCGAATTCA TGACCGGCCA CGGCTTTCTC
GAAGTCGAGA CGCCGATGAT GCACCCGATC CCCGGCGGCG CCGCGGCCAA GCCCTTCGTC
ACCCACCACA ACGCGCTCGA CATGGAGCTC TTCCTGCGCA TCGCGCCCGA GCTCTATCTC
AAGCGGCTCG TCGTCGGCGG CTTCGAGAAG GTGTTCGAGA TCAACCGCAA CTTCCGCAAC
GAGGGCTTGA GCACGCGCCA CAACCCCGAG TTCACGATGA TGGAGTTCTA CGAGGCCTAC
CGCGAATATC GCTACCTCAT GGACTTCACC GAGGCGCTGA TCCGCCACAC CGCGGTCGCC
GCGACCGGCT CGACGACGAT TTCCTACCAG GGAAGCACGA TCGAACTCGG CACGCCCTTC
GACCGCCTGA CCATCGTCGA GGCGGTGCGC AAATACCACC CCGAGTACAC CGTCGAGCAA
CTCAACGATC GCGACTGGCT GACCGCGCAA TTCACGGCGA TGAAGGCCAA GTACCGCGAG
CACGACGGGC TCGGCGGCCT GCAGCTGACC TTCTTCGAGG AGACGACCGA GGCGCTGCTC
GTGCAGCCGA CCTTCATTGT CGACTACCCG GCCGAAGTCT CGCCGCTGGC GCGTCGCTCC
GACACGCAGC CCGAGATCAC CGAGCGCTTC GAACTCTTCA TCACCGGCCG TGAAATGGCG
AACGGCTTTT CCGAATTGAA CGACGCCGAG GACCAGGCCG AACGCTTCAT GGAGCAGGTG
CGCGCCAAGG AAGCCGGCGA CGAGGAGGCG ATGCACTACG ACGCCGACTT CATCCGCGCG
CTCGAACACG GCCTGCCGCC GACCGGCGGC TGCGGCATCG GCATCGACCG CCTCGTGATG
CTGCTCACCG ATTCGCCGTC GATCCGCGAC GTCATCCTCT TCCCGCAGAT GCGGCGCGAG
GCCTGA
 
Protein sequence
MTDPTNAPAL DENQIIAERR AKLAAIREAG VAFPNDFERR DYAGRLAHEH GDKSKEALEA 
EAVDVQLAGR MMLKRVMGKA SFATLQDMSG RIQVYVSNDL TGLDAHEAFK RWDLGDFVGV
SGTLFKTNKG ELTIQAKSVR LLSKALRPLP EKFHGLADQE QKYRQRYLDL ITNDDARSTF
VRRSKIIQAI REFMTGHGFL EVETPMMHPI PGGAAAKPFV THHNALDMEL FLRIAPELYL
KRLVVGGFEK VFEINRNFRN EGLSTRHNPE FTMMEFYEAY REYRYLMDFT EALIRHTAVA
ATGSTTISYQ GSTIELGTPF DRLTIVEAVR KYHPEYTVEQ LNDRDWLTAQ FTAMKAKYRE
HDGLGGLQLT FFEETTEALL VQPTFIVDYP AEVSPLARRS DTQPEITERF ELFITGREMA
NGFSELNDAE DQAERFMEQV RAKEAGDEEA MHYDADFIRA LEHGLPPTGG CGIGIDRLVM
LLTDSPSIRD VILFPQMRRE A