| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0879 |
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| Symbol | |
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| ID | 3671644 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | - |
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| Start bp | 928492 |
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| End bp | 930348 |
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| Gene Length | 1857 bp |
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| Protein Length | 618 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637709558 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_314637 |
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| Protein GI | 74316897 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.623076 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGGCGT CGCTGCTCGA CACGATAGAA AGCCCGGCCG ATCTGCGCGC CCTGCCCGCC
GCCGAGCTGC CCGGGCTCGC CGCGGAAGTG CGCGCCTTCC TCATCGATTC GGTCGCCGGC
ACCGGCGGCC ATCTCGCCTC CAACCTCGGC GCCGTGGAAC TCACGCTCGC GCTGCATTAC
GTATTCGACA CGCCGCGTGA CCGCATCGTC TGGGACGTCG GGCACCAGAG CTACACCCAC
AAGATACTCA CCGGCCGGCG CGACGCGATG CAGGGGCTCC GGCAACGCGG CGGGATCGCC
GGTTTCCCGC GCCGGGCCGA GAGCGAGTTC GACGCCTTCG GCACCGGACA TTCGAGCACG
TCAATCTCGG CGGCCCTCGG GATGGCCGAA GCCTTCCATC AACTCGGCTC CGACCAGCGC
GCGGTTGCGG TGATCGGCGA CGGCGCGATG ACCGCGGGCA TGGCCTTCGA GGCGCTCAAC
AACGCCGGTG CGACCGAACT GCCGCTGCTC GTGGTCCTGA ACGACAACGA CATGTCGATT
TCGCCAAACG TCGGCGCGCT GAACAACTAC CTCGCGCGCC TGATGTCGGG CCGCTTCTAC
GCCGCCGCGC GGCGCGCCGG CGACAAGGTC TTGTCGGTCG CGCCGCCGAT CCGCGAGCTC
GCCAAGCGTG CCGAGGAACA TATGAAGGGC ATGGTGACGC CCGGCACCTT GTTCGAGGAA
TTCGGCTTCA ACTACATCGG ACCGATCGAC GGCCACGACC TCGACGTGCT GGTCAACACG
CTGCGCAATA TTCGCCACCT GCGCGGGCCG CAGTTCCTGC ACGTCGTCAC CCGCAAGGGC
AAGGGTTACA CGCCCGCCGA AACGAATCCC TGCCTCTACC ACGGCGTCGC GCGCTTCGAC
CCCGCCGCTG GCGTCGCCGA AAAACGCGCG GGCAAGCCGA GCTACACCGA GGTATTCGGC
GACTGGCTGT GCGACATGGC GGCGTCCGAC CCGCGTCTCG TCGGCATCAC GCCGGCGATG
CGCGAAGGCT CCGGCCTGGT GCGCTTTTCG CAGGAATTCC CCGAGCGCTA TTTCGACGTC
GGCATCGCCG AACAGCACGC GCTGACCTTC GCCGCAGGCC TCGCCTGCGA GGGCGTCAAG
CCCGTCGTCG CGATCTATTC GACCTTCCTG CAGCGCGCCT ACGATCAACT GATCCACGAC
ATCGCGCTGC AGAATCTGCC TGTGACGCTC GCGATCGACC GCGCCGGCCT CGTCGGCGCG
GACGGGCCGA CGCACGCCGG CAGCTTCGAT CTGTCGTTTT TGCGCTGCGT GCCCGATCTC
GTGATCGCCG CACCTTCCGA CGAGAACGAA TGCCGTCGCC TGCTCAGCAC GGCCTTCCTG
CACGACGGGC CGGCGGCCGT TCGTTATCCG CGTGGCTGCG GCACCGGTGC GGCGATCGAA
CCCGGGCTCG AACCGGTCGA GATCGGCAAG GGCGTGTGCC GCCGCCGGGG TCGCGACGTC
GCCCTGCTCG CTTTCGGCAG CCTCGTCGCC CCCGCCCTGA CTGCCGCGGA GCGGCTCGAT
GCGACGGTCG CCGACATGCG CTTCGTCAAG CCGCTCGACG TCGACCTCGT GGGCGAGCTC
GCAGCGGGCC ACCGCCTGCT CGTGACGCTC GAGGAAAACG CGGTGGCCGG CGGTGCCGGT
GCGGCCGTGG CGGAACTCCT GGCACAGCTC GGAATCGTCG TCCCCGTCCT GCAGTTGGGA
CTGTCGGACG TGTTCATCGA GCACGGCGAC GCTGCCGCGA TGCTCGCCGC CTGCGGCCTC
GACGCCCCCG GGATCGAGCG CGCCGTGAGT GAGCGCCTCG CCGCGCTACC GGAGTAA
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| Protein sequence | MPASLLDTIE SPADLRALPA AELPGLAAEV RAFLIDSVAG TGGHLASNLG AVELTLALHY
VFDTPRDRIV WDVGHQSYTH KILTGRRDAM QGLRQRGGIA GFPRRAESEF DAFGTGHSST
SISAALGMAE AFHQLGSDQR AVAVIGDGAM TAGMAFEALN NAGATELPLL VVLNDNDMSI
SPNVGALNNY LARLMSGRFY AAARRAGDKV LSVAPPIREL AKRAEEHMKG MVTPGTLFEE
FGFNYIGPID GHDLDVLVNT LRNIRHLRGP QFLHVVTRKG KGYTPAETNP CLYHGVARFD
PAAGVAEKRA GKPSYTEVFG DWLCDMAASD PRLVGITPAM REGSGLVRFS QEFPERYFDV
GIAEQHALTF AAGLACEGVK PVVAIYSTFL QRAYDQLIHD IALQNLPVTL AIDRAGLVGA
DGPTHAGSFD LSFLRCVPDL VIAAPSDENE CRRLLSTAFL HDGPAAVRYP RGCGTGAAIE
PGLEPVEIGK GVCRRRGRDV ALLAFGSLVA PALTAAERLD ATVADMRFVK PLDVDLVGEL
AAGHRLLVTL EENAVAGGAG AAVAELLAQL GIVVPVLQLG LSDVFIEHGD AAAMLAACGL
DAPGIERAVS ERLAALPE
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