Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tbd_0793 |
Symbol | |
ID | 3673490 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiobacillus denitrificans ATCC 25259 |
Kingdom | Bacteria |
Replicon accession | NC_007404 |
Strand | + |
Start bp | 835718 |
End bp | 838030 |
Gene Length | 2313 bp |
Protein Length | 770 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637709471 |
Product | surface antigen (D15) |
Protein accession | YP_314551 |
Protein GI | 74316811 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG4775] Outer membrane protein/protective antigen OMA87 |
TIGRFAM ID | [TIGR03303] outer membrane protein assembly complex, YaeT protein |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.27416 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAAC CCATGACCCT GACCCGTCTG ACGCTGGCCC TCGCTGCGGT ATTCGTCACG CATGCCGCAT CCGCCGAGGC GCCTTTCGTC GTCAAGGACA TCCGCGTCGA GGGTATCCAG CGCACCGAGG CCGGCACGGT TTTCAGCTAT CTGCCGGTCA AGGTCGGCGA TACGATGACC GACGAGAAGA CCGCTGCCGC GATCAAGGCC TTGTACGCGA CCGGGTTCTT CAAGGACGTC AGGCTCGAGG CGCGCGACGG CGTCGTGATC GTGACCGTGC AGGAGCGGCC GTCGATCGCC AAGATCACCT TGTCCGGCAT CAAGGAATTC TCCGAGGACG ATCTCAAGGC CGGGCTCAAG CAGACCGGCC TTGCCGAAGG GCGCGTGCTG GATCGATCGC TGGTCGAGAA GGCCGAGCAG GAACTGCAGC GCCAGTACTT CAACCGCGGC AAGTACGCGG TCGAGATCAA GTCGACGCTG ACGCCGCTCG AGCGCAACCG CGTCGCCGTG CAGTTCGACG TCGTCGAAGG CGACAGCGCG AAGATCCGCC AAATCAACAT CGTCGGCAAC AAGGCGTTCA AGGAGAAGGA GCTGCTCAAC CAGCTCACCT CGACGACGCC CAACTGGCTG ACCTGGTACA CCAAGAACGA TCAGTATTCG AAGACGCGTC TTGCGGGCGA CCTCGAGGCG CTGCGCTCGT TCTATCTCAA CCGCGGCTAC CTCGAATTCA ACGTCGACTC GACCCAGGTG TCGATCTCGC CCGACAAGCA GGGTATCTAC ATCACGGTCA ACGTCACCGA GGGGCCGCAG TACCGCGTCT CGGACGTCAA GCTCGCCGGA CAGATGCTGG TACCCGAAGC CGAGCTCAGG AAGCTCATCA CGCTCGAGCC GGGCGAAGTG TTCGAGCGCG ACCGCCTGAC CGAGTCGACG AAGAAGATCG GCGACCGCCT CGGCAACGAC GGCTACGCCT TTGCCAACGT CAACGCCGTG CCCGAGCTCG ACAAGGAGAA GAGCACCGTC GCGTTCACGC TTTTCGTGGA TCCGGGCCGG CGCGTCTACG TCAACCGCAT CAACGTCGCC GGCAACACGC GCACGCGCGA CGAGGTCGTG CGCCGCGAAA TTCGCCAGAT GGAAGGCGCC TATTACGACG CCGAGAAGAT CAACCGCTCG CGTGACCGCC TCAACCGTCT CGGCTACTTC AACGAGGTCA ACATCGAGAC CCCGAGCGTG GCGGGAACGA CCGACCAGGT CGACGTCAAC GTCAGCGTCG CCGAGAAGTC GACCGGCAAC ATCATGCTCG GCGCCGGTTT CTCCTCGTCC GAAGGCCTCG TGCTGTCGGG CTCGGTCTCG CAAAGCAACG TCTTCGGTAC CGGCAACCGG CTCTCGGCAC AGATCAACTC GGGGAGCGTC AATACGGTCT ATTCGCTCTC GTACACCAAT CCCTACTACA CGATCGACGG CATCAGCCTC GGCTACGACA TCTACCGGCG CGACGTCGAC GCAAGCGAAC TCGACGGCGT CGGCGACTAC GAGACGTCGA CCTACGGCGC CGGCGTGCGC TTCGGCCTGC CGATCAATGA ACGCGATTTC ATTTCCTTCG GCCTGACCTA CGAGCAGACG TCGATCACGA CCGATGCCGA CAGCCCGACC AACTACCAGA AGTTCGAGGA GGAGTTCGGC AGCGACAACG ACACCGTGCG CGTCGACACC TCGTGGGCAC GCGATACGCG CAATAGCCAC CTGTTCCCGA CCCGCGGTCT GTTCCAGCGC GTGGCGGCCG AAGTCGGCAC GCCGCTCGGC AGTCTCGAGT ACTACAAGCT GTCGTTCCAG CACCAGCAAT ACTTCCCGCT CAGCAAGCGC TTCACGCTCA TGCTGAACGG CGAAGTCGGC GTCGGCGGCG GCCTGTCGGA CAAGCCGCTG CCGTTCTTCA AGAACTTCTA CGCAGGCGGC ACGAGTTCGG TGCGCGGCTT CGAGAACGGC ACGCTCGGTC CGAAGGACGA CGAGAACAAC GCGCTCGGCG GCGACAAACG CGTCGTCGGC AACGCCGAGC TGTTCTTCCC GCTGCCCGGC CTCAAGGACG ACCAGTCCCT GCGCATGTCG GCCTTCGTCG ACGCGGGCGC GACCTTCGGC CCGAATGATG ACCAGCACCG CTACGAGAAT TTCGCCTTCG GTGACCTGCG CTATTCGGCG GGCGTCGCCG TGCTGTGGGT CTCACCGCTC GGCCCGCTCA AGTTCAGCCT CGCACAACCC CTCTCGAGCA AGGAAGACGA CGAGGAAGAG ATGTTCCAAT TCACCTTGGG CAACGTGTTC TGA
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Protein sequence | MKKPMTLTRL TLALAAVFVT HAASAEAPFV VKDIRVEGIQ RTEAGTVFSY LPVKVGDTMT DEKTAAAIKA LYATGFFKDV RLEARDGVVI VTVQERPSIA KITLSGIKEF SEDDLKAGLK QTGLAEGRVL DRSLVEKAEQ ELQRQYFNRG KYAVEIKSTL TPLERNRVAV QFDVVEGDSA KIRQINIVGN KAFKEKELLN QLTSTTPNWL TWYTKNDQYS KTRLAGDLEA LRSFYLNRGY LEFNVDSTQV SISPDKQGIY ITVNVTEGPQ YRVSDVKLAG QMLVPEAELR KLITLEPGEV FERDRLTEST KKIGDRLGND GYAFANVNAV PELDKEKSTV AFTLFVDPGR RVYVNRINVA GNTRTRDEVV RREIRQMEGA YYDAEKINRS RDRLNRLGYF NEVNIETPSV AGTTDQVDVN VSVAEKSTGN IMLGAGFSSS EGLVLSGSVS QSNVFGTGNR LSAQINSGSV NTVYSLSYTN PYYTIDGISL GYDIYRRDVD ASELDGVGDY ETSTYGAGVR FGLPINERDF ISFGLTYEQT SITTDADSPT NYQKFEEEFG SDNDTVRVDT SWARDTRNSH LFPTRGLFQR VAAEVGTPLG SLEYYKLSFQ HQQYFPLSKR FTLMLNGEVG VGGGLSDKPL PFFKNFYAGG TSSVRGFENG TLGPKDDENN ALGGDKRVVG NAELFFPLPG LKDDQSLRMS AFVDAGATFG PNDDQHRYEN FAFGDLRYSA GVAVLWVSPL GPLKFSLAQP LSSKEDDEEE MFQFTLGNVF
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