| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0792 |
|---|
| Symbol | |
|---|
| ID | 3673489 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiobacillus denitrificans ATCC 25259 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007404 |
|---|
| Strand | + |
|---|
| Start bp | 834357 |
|---|
| End bp | 835721 |
|---|
| Gene Length | 1365 bp |
|---|
| Protein Length | 454 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637709470 |
|---|
| Product | peptidase M50, putative membrane-associated zinc metallopeptidase |
|---|
| Protein accession | YP_314550 |
|---|
| Protein GI | 74316810 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0750] Predicted membrane-associated Zn-dependent proteases 1 |
|---|
| TIGRFAM ID | [TIGR00054] RIP metalloprotease RseP |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.534623 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.220664 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCAGCTAC GCATGAATCT GCTGACGACC CTGCTGTGGT TTCTGCTCGC CATCGGTATC
CTCGTTGTGG CGCACGAGCT CGGCCATTAT TTCGCGGCGC GTCTGGCCGG CGTGAAGGTG
TTGCGTTTTT CGGTCGGTTT CGGCAGGCCC CTGTTCAGTC GGCGCCTCGG GCGCGACCGC
ACCGAATGGA CCGTATCGGC CCTGCCGTTC GGCGGCTACG TCAAGATGCT CGACGAGCGC
GAAGGCGAGG TCCCCGCTGC CGAGGCGCAC CGTAGTTTCA ATCGCGCAAC CGTCTGGCGC
CGTATCGGGA TCGTCGTCGC CGGGCCCACG GCCAATTTCC TGCTCGCCAT CGTTTTCTAT
TGGGCGCTCT TCGTGCACGG CGTGCCGGCG ATGAAGCCGC TGATCGGCGA GCCGCCGGCG
GGCACGCCCG CGGCGCACGC GGGGCTCGCC GCCGGCGACG AGATTCGCAG CGTCAACGGT
GTCGAGACGC CGTCGTTCCA GGACCTGCGC CTCAACCTGC TGCGTGCCGG CGTGGCCGGC
GGTACGCTCG AGCTCGCGCT CGCCGACGGG CGCAGCGCAC GGCTCGAGGT GTCGCCGCTC
GAAACCGAAA ACCTCGAGCG CGACGCGCTG ACGCCGCTCG GCATCGTGCG CTACGACCCC
GATATCGCGC CCGTGATCGG GGAGGTGTTG CCCGACGGTG CCGCGGCGCG CGCCGGATTC
AAGCGCTGGG ACCGGCTGAT CGCCGCCGAC GGCGAGGCGA TCGCAACCTG GCAGGGGTGG
GTCGAAGTCG TGCGTGCGCA TCCGTCCAGG CCCTTGCGCA TCGATTATCA GCGCGACGGC
GAACGCCGCG TGTCGACGGT GACGCCCGAC GCGGTCGACG AGGCGGGCAA GCGCGTCGGC
AAGATCGGCG CAGGTCCGCA TGTCGATCCC GCCGTATTCG ATGCGCTGAT GACCGAACTG
CATTACGGCC CGGTCGAGGC CTTGTGGCAA GGCGCCGGCA AGACCTGGGA CATGACCGTG
TTCACGCTCG AGATGATGGG CCGCATGGTG CTCGGCCAGG TGTCGTGGAA GAACCTGTCC
GGACCCTTGA CCATCGCCGA TTACGCGGGC CAGAGCGCCG ACCTCGGATG GATCAGTTTC
GTCGGTTTTC TCGCGCTCGT GAGCGTGAGT CTCGGGGTGC TGAACCTGCT GCCAATCCCG
CTGTTGGACG GTGGACACCT CATGTATTAT GTCGCGGAAG TTTTTCGCGG TCGGCCGGTG
TCCGAGCGCG CCATGGAAAT AGGGAGCCGG ATCGGCATGG CGCTTCTGCT GTTGCTGATG
TCGTTCGCCC TCTTCAACGA TTTGCAACGT CTAATAAGCG GATGA
|
|---|
| Protein sequence | MQLRMNLLTT LLWFLLAIGI LVVAHELGHY FAARLAGVKV LRFSVGFGRP LFSRRLGRDR
TEWTVSALPF GGYVKMLDER EGEVPAAEAH RSFNRATVWR RIGIVVAGPT ANFLLAIVFY
WALFVHGVPA MKPLIGEPPA GTPAAHAGLA AGDEIRSVNG VETPSFQDLR LNLLRAGVAG
GTLELALADG RSARLEVSPL ETENLERDAL TPLGIVRYDP DIAPVIGEVL PDGAAARAGF
KRWDRLIAAD GEAIATWQGW VEVVRAHPSR PLRIDYQRDG ERRVSTVTPD AVDEAGKRVG
KIGAGPHVDP AVFDALMTEL HYGPVEALWQ GAGKTWDMTV FTLEMMGRMV LGQVSWKNLS
GPLTIADYAG QSADLGWISF VGFLALVSVS LGVLNLLPIP LLDGGHLMYY VAEVFRGRPV
SERAMEIGSR IGMALLLLLM SFALFNDLQR LISG
|
|---|
| |