| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0693 |
|---|
| Symbol | |
|---|
| ID | 3672661 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiobacillus denitrificans ATCC 25259 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007404 |
|---|
| Strand | - |
|---|
| Start bp | 732249 |
|---|
| End bp | 734369 |
|---|
| Gene Length | 2121 bp |
|---|
| Protein Length | 706 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637709368 |
|---|
| Product | polynucleotide phosphorylase/polyadenylase |
|---|
| Protein accession | YP_314451 |
|---|
| Protein GI | 74316711 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
|---|
| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0464736 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.106902 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGCTA TCAAGAAAAC GTTTACCTAC GGTCGCCACC AAGTCACGCT GGAAACCGGC
GAAATCGCGC GTCAGGCGTC CGGCGCCGTC GTCGTCAACA TGGACGACAC GATGGTGCTC
GTGACCGTGG TCGCCAAGAA CGAAGTCAAG CCCGGCCAGG ATTTCTTCCC GCTGACCGTC
GACTACCAGG AAAAGACCTA CGCCGCCGGC CGCATCCCCG GGGGATTTCT CAAGCGCGAA
AGCCGGCCGT CGGAAGGTGA AACGCTGATC TCCCGCCTGA TCGACCGCCC GATCCGCCCG
CTCTTCCCCG AAGGCTTCTT CAACGAAGTG CAGATCATCG CGACGGTGAT GTCGTCGAAT
CCCGAAGTCA GCGCCGACAT CCCCGCGCTG ATCGGCGCTT CGGCCGCGCT CTCGCTCTCC
GGCCTGCCGT TCGACGGCCC GGTCGGCGCG GCGCGCGTCG GCTTCATCAA CGGCGAATAC
GTGCTCAACC CGACCAACGC CGAACTCAAG GATTCCGCGC TCGACCTCGT CGTCGCCGGC
ACCGAAAGCG CCGTGCTGAT GGTTGAATCC GAGGCCATGG AACTGCCCGA GGACATCATG
CTCGGCGCTG TCGTCTTCGG CCACACGCAG ATGCAGGCCG CGATCAACGC GATCAACGAG
CTGGCCGACG AAGCCGGCGC CGACGCCTGG GACTGGGCGC CGCCGGCCGA AGACACGGCG
ATGGTCGACC GCCTCAAGGC GCTCGCCGAA GACGGCCTGC AACAGGCCTA CAACATCAAG
CAGAAGCGGG CACGCATGGC CGCCGTCGAC GAGGTGCGCA GCAAGGCCTT CGCCGAACTC
ATCACGGCCG ACATGGACAC GGTGGCGGCC AACCACGTCA AGGACGCGTT CCACCGCCTC
GAAGCCGGCG TCGTGCGCAA CCGCATCCTC TCGGGCCAGC CGCGCATCGA CGGCCGCGAC
ACCCGCACCG TGCGCCCGAT CACGATCCGT ACCGGCGTGC TGCCGCGCGC CCACGGCTCG
GCGCTGTTCA CGCGCGGTGA AACGCAGGCC CTGGTCGTGA CGACGCTCGG CACGGGCCGC
GACGAGCAGA CCATCGACGC ACTCGAGGGC AGCTACTCCG ACCGCTTCAT GCTGCACTAC
AACATGCCGC CCTATGCGAC CGGCGAAACC GGCCGCGTCG GCTCGCCCAA GCGTCGCGAG
ATCGGCCACG GCCGGCTCGC CAAGCGCGCG CTGCTGGCGG TGCTGCCGAG CAAGGAAGAA
TTCGGCTACA CCATGCGCGT GGTCTCCGAA ATCACCGAAT CGAACGGCTC GTCGTCGATG
GCCTCGGTGT GCGGCGGCTG CCTCTCGCTG ATGGACGCCG GCGCGCCGCT CAAGGCGCAC
GTCGCCGGCA TCGCCATGGG CCTGATCAAG GAAGGCAACC GCTTCGCCGT GCTGACGGAC
ATTCTCGGCG ACGAAGACCA CCTCGGCGAC ATGGACTTCA AGGTCGCGGG CACCGAAAAC
GGCGTGACCG CGCTGCAGAT GGACATCAAG ATCACGGGCA TCACCAAGGA GATCATGCAG
GCCGCGCTCA CCCAGGCGAA GGAAGGCCGC ATGCACATCC TCGGCATCAT GAAGGCGTCG
GTCTCCGAGA CCCATGAGAT GTCGGCCTAC GCGCCGCGCA TCATCGCGAT GAAGATCAAT
CCCGAGAAGA TCCGCGACGT GATCGGCAAG GGCGGCGCCG TGATCCGCGC GCTGACCGAG
GAAACCGGCA CCCAGATCGA CATCCAGGAA GACGGCAGCG TAAAGATCGC CTGTACCAGC
ATGGAGGCCG GCGAACTCGC GAAGAAGCGC ATCGAGGAAA TCACCGCCGA GGTCGAAGTC
GGCAAGGTCT ACGAGGGCCC GGTCATCAAG CTGCTCGACT TCGGCGCGAT CGTCAACGTG
CTGCCGGGAC GCGACGGCCT GCTGCACATC TCGCAGATCG CCCACGAGCG CGTCAATACG
ATCGGCGACT ACCTCAAGGA AGGCCAGGTC GTGCGCGTGA AGATTCTCGA GGCCGACGAG
AAAGGCCGCC TGCGCCTGTC GATGAAGGCC TTGCTCGAAG CCCCCGCGCC GACGAGCGGC
GGCGAAGAAC ACGCGAGCTG A
|
|---|
| Protein sequence | MSAIKKTFTY GRHQVTLETG EIARQASGAV VVNMDDTMVL VTVVAKNEVK PGQDFFPLTV
DYQEKTYAAG RIPGGFLKRE SRPSEGETLI SRLIDRPIRP LFPEGFFNEV QIIATVMSSN
PEVSADIPAL IGASAALSLS GLPFDGPVGA ARVGFINGEY VLNPTNAELK DSALDLVVAG
TESAVLMVES EAMELPEDIM LGAVVFGHTQ MQAAINAINE LADEAGADAW DWAPPAEDTA
MVDRLKALAE DGLQQAYNIK QKRARMAAVD EVRSKAFAEL ITADMDTVAA NHVKDAFHRL
EAGVVRNRIL SGQPRIDGRD TRTVRPITIR TGVLPRAHGS ALFTRGETQA LVVTTLGTGR
DEQTIDALEG SYSDRFMLHY NMPPYATGET GRVGSPKRRE IGHGRLAKRA LLAVLPSKEE
FGYTMRVVSE ITESNGSSSM ASVCGGCLSL MDAGAPLKAH VAGIAMGLIK EGNRFAVLTD
ILGDEDHLGD MDFKVAGTEN GVTALQMDIK ITGITKEIMQ AALTQAKEGR MHILGIMKAS
VSETHEMSAY APRIIAMKIN PEKIRDVIGK GGAVIRALTE ETGTQIDIQE DGSVKIACTS
MEAGELAKKR IEEITAEVEV GKVYEGPVIK LLDFGAIVNV LPGRDGLLHI SQIAHERVNT
IGDYLKEGQV VRVKILEADE KGRLRLSMKA LLEAPAPTSG GEEHAS
|
|---|
| |