| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0608 |
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| Symbol | |
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| ID | 3673719 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | + |
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| Start bp | 636269 |
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| End bp | 638545 |
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| Gene Length | 2277 bp |
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| Protein Length | 758 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637709280 |
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| Product | RNAse R |
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| Protein accession | YP_314366 |
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| Protein GI | 74316626 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.189937 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTTCCA GTAAATCACG CAGCCGCGGC GCGAAACACC AGGTCCCCGC GATCCGTCTC
GCCGATCCGT TCTATGCGCG CGAAACCGAG CGCTACGAAT CACCGCTTCC GAGCCGCGAG
TACATCCTGC AACTGCTGAG CGACGCGGGC TGCCCGCTCG ACGTCGACGC GTTCGCCGAA
CAGCTCCAGA TCACCGAAGC CGAGCGCGAC TTGTTCCAGC GCCGTCTCGG CGCGATGCAG
CGCGACGGCC AGCTGATGCT GAACCGCAAG CGCCAGCTCT GCCTGCCCGA CAAGCTCGAT
CTGATCAAGG GCCGCGTCGA GGGTCACCCT GACGGCTTCG GCTTCGTCGT TCCCGAGGAA
GGCGGCGACG ACCTCTTCCT CTCGCCCAAG GAAATGCATC GCGTGCTGCA CGGCGACAAG
GTGCTCGTGC GCGTCGCCGG CTTCGACCGC CGCGGGCGGC GCGAGGCCAA GATCGTCGAG
GTGCTCGAGC ACGTCAACAA ATTCGTCGTC GGCCGTTACT ACCTCGAGGG CGGGGTCGGC
TTCCTGATCG CCGAAAACCG CCGTATCAAC CAGGACATCC TGGTGCCGCC CGAAAACGCG
GGGAACGCCA AGTCCGGCCA GGTGGTGACG GTCGAGATCG TCAGCCAGCC CGGCGCGCAC
AACGAGGCCG TCGGCCGGGT CACCGAAGTG CTCGGCAGTT TCACCGGCCC CGGCATGGAA
ATCGAGATCG CGTTGCGCAA GCACGATCTG CCCTACGTCT TCCCACCCGA GGTCGAAGCG
CAGGCGTCGA AGTTGCCGAA CAAGGTGCTG AAAAAGGATC TTGCCGGGCG CGAGGACATC
CGCCAGCTGC CGCTCGTCAC GATCGACGGC GAGACCGCCC GCGACTTCGA TGACGCCGTC
TACTGCGAAC CGCTCGGGCG CAGCGGCTAC CGCCTGGTCG TCGCGATCGC CGATGTCAGC
CATTACGTTC ATCCGCGCGA CGCGCTCGAC AGCGAGGGCT TCAACCGCGG CAACTCGGTC
TACTTCCCGC GCCGCGTCAT TCCGATGCTG CCCGAGGCGC TGTCGAACGG CCTGTGCTCG
CTCAACCCCG AGGTCGACCG CCTGTCGATG GTCTGCGACA TGCGCATCAC GACCGCCGGC
AACATCAAGG AATACCGCTT CTATCCGGCG GTCATCCATT CGCACGCGCG CCTGACCTAC
AACCAGGTGT GGGACTGGCT CTCCGGCGCT GCCAAGCCGG AAAAGAAACA CGCCGCGCTG
ATGCCGCACC TCGAAGCGCT CGACAAACTG TTCCGCACGC TGCTCAAGGC GCGCGCCAAG
CGCGGCGCGA TCGATTTCGG CTCGACCGAG ACGCAGATCG TTTTCGACGA CAACGGCAAG
ATCAAGGAGA TCGTGCCGGT GATCCGCAAC GATGCCCATC GCATCATCGA GGAATGCATG
CTTGCGGCCA ACGTCTGCGC GTCTGACTTC CTGCACGAGA ACAAGCAGCC CGCCCTGTTC
CGCGTGCACG AGGGGCCGAC GCCCGAAAAG CTGACTGCGC TGCGCGGCTT TCTGGCGGAA
TTCGGTCTCG ATCTCGGCGG CGGCGACAAG CCACACGCCA AGGATTACGC CGCGCTGCTC
GAAAACATCA AGGACCGGCC GGACCACGGC CTGCTGCAGA CCGTCATGCT GCGCTCGCTC
AGGCAGGCGA TCTACAGCCC CGACAACAAG GGCCACTTCG GCCTGGCCTA CGAGGCCTAC
ACCCATTTCA CCTCGCCGAT CCGGCGCTAT CCTGACCTGC TGGTGCACCG TGGCATCAAG
GCCGTGCTCA ACGGCGAGAA ACTGCCGGCC AAGGGCCTCG CGGAAATCGG CGCCCACTGC
TCGATGACCG AACGCCGCGC CGACGACGCG ACGCGCGACG TCGACGCCTG GCTCAAGACC
TACTTCATGC AGGACCGCAT CGGCGACGAA TACGACGGCA CCGTCAGCGC GGTGACGAGC
TTCGGCATGT TCGTCGCGAT CGACGAGATT TTCATCGAGG GCCTCGTCCA CGTCTCGGAG
CTCGGCCAGG ATTACTTCCA CTACGACCAG GCCAAGCACA TGATGCTCGG CGAACGGACC
GGAAAAAGAT ATCGGCTCGG CGACCGCGTG CGCATCAAGG TGATGCGCGC CGACATCGAG
ACCAGCAAGA TCGACTTCAG CCTCGTCGAG ACGATCGAGA CTGCGACCCA GCCCGAGGAG
AGCGTCGCGC CGAAGAAGAA ACGCAGCAAG ACACGCGGCG GCGGCAAGAA GAAATGA
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| Protein sequence | MSSSKSRSRG AKHQVPAIRL ADPFYARETE RYESPLPSRE YILQLLSDAG CPLDVDAFAE
QLQITEAERD LFQRRLGAMQ RDGQLMLNRK RQLCLPDKLD LIKGRVEGHP DGFGFVVPEE
GGDDLFLSPK EMHRVLHGDK VLVRVAGFDR RGRREAKIVE VLEHVNKFVV GRYYLEGGVG
FLIAENRRIN QDILVPPENA GNAKSGQVVT VEIVSQPGAH NEAVGRVTEV LGSFTGPGME
IEIALRKHDL PYVFPPEVEA QASKLPNKVL KKDLAGREDI RQLPLVTIDG ETARDFDDAV
YCEPLGRSGY RLVVAIADVS HYVHPRDALD SEGFNRGNSV YFPRRVIPML PEALSNGLCS
LNPEVDRLSM VCDMRITTAG NIKEYRFYPA VIHSHARLTY NQVWDWLSGA AKPEKKHAAL
MPHLEALDKL FRTLLKARAK RGAIDFGSTE TQIVFDDNGK IKEIVPVIRN DAHRIIEECM
LAANVCASDF LHENKQPALF RVHEGPTPEK LTALRGFLAE FGLDLGGGDK PHAKDYAALL
ENIKDRPDHG LLQTVMLRSL RQAIYSPDNK GHFGLAYEAY THFTSPIRRY PDLLVHRGIK
AVLNGEKLPA KGLAEIGAHC SMTERRADDA TRDVDAWLKT YFMQDRIGDE YDGTVSAVTS
FGMFVAIDEI FIEGLVHVSE LGQDYFHYDQ AKHMMLGERT GKRYRLGDRV RIKVMRADIE
TSKIDFSLVE TIETATQPEE SVAPKKKRSK TRGGGKKK
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