Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tbd_0594 |
Symbol | ispG |
ID | 3673704 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiobacillus denitrificans ATCC 25259 |
Kingdom | Bacteria |
Replicon accession | NC_007404 |
Strand | + |
Start bp | 622478 |
End bp | 623701 |
Gene Length | 1224 bp |
Protein Length | 407 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637709265 |
Product | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase |
Protein accession | YP_314352 |
Protein GI | 74316612 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.61983 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACGACTC AAATTGTCCG CCGCACCACC CGTCAGGTGC GGATCGGCCC GATATGCGTA GGCGGCGACG CGCCGGTGGC GGTGCAGTCG ATGACCAACA CCGACACGGT CGACGTCAAT GCGACCGTAA GCCAGGTGCA GGCGCTCGCT GCCGCCGGCT CGGAACTCGT GCGGCTCACC GTGAACACGC TGGAAGCGGC GGCGGCCGTG CCGCGCATCC GCGAGCGCCT CGATGTGCTG GGCTGTCGCG TGCCGCTGAT CGGCGACTTC CACTTCAACG GCCACAAGCT CCTGACCCAG GTCCCCGAGT GCGCCCAGGC GCTGGCCAAA CTCCGGATCA ATCCCGGCAA CATCGGCCGC GGCGAGAAAC GCGACGAGCA GTTCGCGACG CTGATCGACG TCGCCTGCCG TCACGACAAG CCGATCCGCA TCGGCGTCAA CTGGGGCAGT CTCGACCAGG CGCTGGCCGC GCGCATGATG GACGACAACG CCAGGCGCGC GCAGCCTGAA GATGCCGAGG TCGTCATGCG CCGGGCGATG GTCGCGTCGG CCCTCGAGTC GGCGCGCAAG GCCGAGGAAC TCGGATTGGG CGGCGACAGG ATCATCCTCT CCTGCAAGAT GAGCCGGGTA CAGGACTTGA TCGCGGTTTA CCGGGATCTC GCGGCGCAGT GCGACTATCC GCTCCACCTC GGCCTCACCG AGGCCGGCAT GGGCAGCAAG GGCATCGTCG CCTCGACCGC GGCGCTCGCG GTACTGCTGC AGGAGGGGAT CGGCGACACG ATACGCATTT CGCTGACCCC CGAGCCGGGC GGCGACCGCG CCCAGGAAGT CCGCGTCGGC CAGGAAATCC TGCAGGCGCT CGGCCTGCGC GCCTTCACGC CGCAAGTCAC GGCATGCCCG GGGTGCGGCC GCACGACCTC GACCGTTTTC CAGGAGCTCG CGCAGGATAT CGAGACCTAT CTGCGCACGC AGATGCCGAT CTGGCGCAGC CGCTACCCCG GGGTCGAAAC CATGCAGGTG GCGGTCATGG GCTGCGTCGT CAACGGCCCT GGCGAATCCA AGCACGCGAA CATCGGAATC TCGCTGCCCG GCACGGGCGA AGTGCCGGTC GCGCCGGTCT ACGTCGACGG CGAAAAGACC GTGACGCTCA AGGGCGACCG CATCGCCGCG GAGTTCCAGG CGATCGTCGA AGACTACGTG CGCACGCGGT ACGGCAGCGC CTGA
|
Protein sequence | MTTQIVRRTT RQVRIGPICV GGDAPVAVQS MTNTDTVDVN ATVSQVQALA AAGSELVRLT VNTLEAAAAV PRIRERLDVL GCRVPLIGDF HFNGHKLLTQ VPECAQALAK LRINPGNIGR GEKRDEQFAT LIDVACRHDK PIRIGVNWGS LDQALAARMM DDNARRAQPE DAEVVMRRAM VASALESARK AEELGLGGDR IILSCKMSRV QDLIAVYRDL AAQCDYPLHL GLTEAGMGSK GIVASTAALA VLLQEGIGDT IRISLTPEPG GDRAQEVRVG QEILQALGLR AFTPQVTACP GCGRTTSTVF QELAQDIETY LRTQMPIWRS RYPGVETMQV AVMGCVVNGP GESKHANIGI SLPGTGEVPV APVYVDGEKT VTLKGDRIAA EFQAIVEDYV RTRYGSA
|
| |