Gene Tbd_0594 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTbd_0594 
SymbolispG 
ID3673704 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiobacillus denitrificans ATCC 25259 
KingdomBacteria 
Replicon accessionNC_007404 
Strand
Start bp622478 
End bp623701 
Gene Length1224 bp 
Protein Length407 aa 
Translation table11 
GC content68% 
IMG OID637709265 
Product4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 
Protein accessionYP_314352 
Protein GI74316612 
COG category[I] Lipid transport and metabolism 
COG ID[COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 
TIGRFAM ID[TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.61983 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGACTC AAATTGTCCG CCGCACCACC CGTCAGGTGC GGATCGGCCC GATATGCGTA 
GGCGGCGACG CGCCGGTGGC GGTGCAGTCG ATGACCAACA CCGACACGGT CGACGTCAAT
GCGACCGTAA GCCAGGTGCA GGCGCTCGCT GCCGCCGGCT CGGAACTCGT GCGGCTCACC
GTGAACACGC TGGAAGCGGC GGCGGCCGTG CCGCGCATCC GCGAGCGCCT CGATGTGCTG
GGCTGTCGCG TGCCGCTGAT CGGCGACTTC CACTTCAACG GCCACAAGCT CCTGACCCAG
GTCCCCGAGT GCGCCCAGGC GCTGGCCAAA CTCCGGATCA ATCCCGGCAA CATCGGCCGC
GGCGAGAAAC GCGACGAGCA GTTCGCGACG CTGATCGACG TCGCCTGCCG TCACGACAAG
CCGATCCGCA TCGGCGTCAA CTGGGGCAGT CTCGACCAGG CGCTGGCCGC GCGCATGATG
GACGACAACG CCAGGCGCGC GCAGCCTGAA GATGCCGAGG TCGTCATGCG CCGGGCGATG
GTCGCGTCGG CCCTCGAGTC GGCGCGCAAG GCCGAGGAAC TCGGATTGGG CGGCGACAGG
ATCATCCTCT CCTGCAAGAT GAGCCGGGTA CAGGACTTGA TCGCGGTTTA CCGGGATCTC
GCGGCGCAGT GCGACTATCC GCTCCACCTC GGCCTCACCG AGGCCGGCAT GGGCAGCAAG
GGCATCGTCG CCTCGACCGC GGCGCTCGCG GTACTGCTGC AGGAGGGGAT CGGCGACACG
ATACGCATTT CGCTGACCCC CGAGCCGGGC GGCGACCGCG CCCAGGAAGT CCGCGTCGGC
CAGGAAATCC TGCAGGCGCT CGGCCTGCGC GCCTTCACGC CGCAAGTCAC GGCATGCCCG
GGGTGCGGCC GCACGACCTC GACCGTTTTC CAGGAGCTCG CGCAGGATAT CGAGACCTAT
CTGCGCACGC AGATGCCGAT CTGGCGCAGC CGCTACCCCG GGGTCGAAAC CATGCAGGTG
GCGGTCATGG GCTGCGTCGT CAACGGCCCT GGCGAATCCA AGCACGCGAA CATCGGAATC
TCGCTGCCCG GCACGGGCGA AGTGCCGGTC GCGCCGGTCT ACGTCGACGG CGAAAAGACC
GTGACGCTCA AGGGCGACCG CATCGCCGCG GAGTTCCAGG CGATCGTCGA AGACTACGTG
CGCACGCGGT ACGGCAGCGC CTGA
 
Protein sequence
MTTQIVRRTT RQVRIGPICV GGDAPVAVQS MTNTDTVDVN ATVSQVQALA AAGSELVRLT 
VNTLEAAAAV PRIRERLDVL GCRVPLIGDF HFNGHKLLTQ VPECAQALAK LRINPGNIGR
GEKRDEQFAT LIDVACRHDK PIRIGVNWGS LDQALAARMM DDNARRAQPE DAEVVMRRAM
VASALESARK AEELGLGGDR IILSCKMSRV QDLIAVYRDL AAQCDYPLHL GLTEAGMGSK
GIVASTAALA VLLQEGIGDT IRISLTPEPG GDRAQEVRVG QEILQALGLR AFTPQVTACP
GCGRTTSTVF QELAQDIETY LRTQMPIWRS RYPGVETMQV AVMGCVVNGP GESKHANIGI
SLPGTGEVPV APVYVDGEKT VTLKGDRIAA EFQAIVEDYV RTRYGSA