| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0549 |
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| Symbol | |
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| ID | 3673800 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | - |
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| Start bp | 574855 |
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| End bp | 576600 |
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| Gene Length | 1746 bp |
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| Protein Length | 581 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637709220 |
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| Product | putative Type II secretory pathway component PulD |
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| Protein accession | YP_314307 |
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| Protein GI | 74316567 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02519] pilus (MSHA type) biogenesis protein MshL |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGATGA ACACTGGCTT GAAACGCTTT CGCTTGACGC TGCTCGCTGC CGTGGTGCTC
ACGAGCGGAT GCGTGCCGCC GCGGGCGTTC GACACCTCGC CCGGCCACAT CACGCAACCG
GCCCAGCCCG CGGCAGGCAC GCCGCCGGCT CCGGTCCGGG CCGCGCCCGT GCTGCCGCCA
CCGAAACCCA GCGCGCCCGT ACCGACGTAT ACGGTCGTGG TCAACGACGT CCCGGTCAAG
GATCTGCTGT TCTCGATCGC GCGCGACACC CAGTACAACA TCGACCTGCA TCCGGGCATC
TCCGGTCGCG TCTCGCTCAA CGCCGTGCAG GAGCCCCTGC CGGCGATCCT CGAGCGCATC
GCGCGCCAGG CCGATCTGCG CTACGAGATG AACGGGCGCA CGGTGTCGAT CATGCCCGAC
TCGCCCTACG TCAAGACCTA TACCGTCAAC TACGTCAACG TCGCGCGCAA CACGACATCG
AGCGTCGGGG TCGCGGCGCA GATCGCTAGC ACCGGCGGAA ACATCAGCTC GGCGAGCGCA
GGCGGTTCGG CCGTCGGCAA CTCGTCGACG ACCACGGTCG CGAGCGAATC CAACAACAAC
CTCTGGAACG TGCTTGCCGA GAACATCCGC ACGATTCTCG CGGGCACTCG CGCCGTCACC
CAGAGCAACG AGGAGCGCGC CGCGCGTCTG GAGGCCGAGA AGGCAGCACG CGCCGAACGC
GTCTCGCAGG CCGAAGCTGC GAGCAAGGCC GGCGCCGGGG CCGCCAGCCT GTTCACCGCG
GCATTCGACA GACAGTCGAG CTTCGACGCA AGCAACGACG TCGCGGTCAA CCCTGTGGCC
GGAACCGTGA CCGTGCTCGG CACCGCCAAA CAGCAGGCGC TGGTCCAGCA ATACCTCGAC
CGCGTGATGC AATCGGCGCA GCGGCAGGTG CTGATCGAGG CGACGATCGT CGAAGTCACG
CTCAAGGACC AGTATCGCGC GGGTATCGAC TGGTCGAAGG CCCTGGAGGG TACGACGGGG
TGGACGATCA ACACTTTGAG CGGCGGCAGC AACGCGCTCG CCAACACACT CACACCGTTC
ATCCAGGCGA CGTACACCAA CGCGGGTAGT AACGGATTTA CCGCCGCGAT CGACCTGCTG
GAATCGTTCG GCAAGGCCAA GGTGCTGTCG AGCCCCAAGC TCATGGCGCT GAACAACCAG
ACCGCGCTGC TCAAGGTCGT CGACAATCTC GTGTATTTCA ACGTCAAAGC CGACACGACG
GCGACCGCGA ACGTAGGGAC GACGACGACG TTCACGACGA CGCCGCAGAC CGTGCCGGTC
GGCATCGTGA TGACGATGAC GCCGCAGATC AACGAGAACG GGATGGTTTC GCTGACGGTC
CGCCCGACGA TTTCGCGAAA CGTCGGTTTC GTCCGAGATC CCAATCCAAG CATTCCGGTC
GCGATCCCCA ACCAGGTTCC CGTCATCCAG GTCCGCGAAA TGGAGTCATT GCTGCAGGTC
CGCAGCGGTC AGACCGTCAT TCTCGGCGGG CTGATCCAGG ACGACTCGAA CAACGCGCGG
GACGGCATCC CGGGCCTTTC GCGCCCCGAA GGCATCGGCG CCGTGTTCGG TCAGCACGAG
CAAATCAACA GCCAGACCGA ACTCGTGATC TTCCTGCGCC CGATCGTCGT CGCCAATCCC
TCGCTCGAGG ACGAGGAGTT GCGGCGTTTC CAGCACCTCC TGCCGCGCGT CGGCAGCAGG
CAGTGA
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| Protein sequence | MTMNTGLKRF RLTLLAAVVL TSGCVPPRAF DTSPGHITQP AQPAAGTPPA PVRAAPVLPP
PKPSAPVPTY TVVVNDVPVK DLLFSIARDT QYNIDLHPGI SGRVSLNAVQ EPLPAILERI
ARQADLRYEM NGRTVSIMPD SPYVKTYTVN YVNVARNTTS SVGVAAQIAS TGGNISSASA
GGSAVGNSST TTVASESNNN LWNVLAENIR TILAGTRAVT QSNEERAARL EAEKAARAER
VSQAEAASKA GAGAASLFTA AFDRQSSFDA SNDVAVNPVA GTVTVLGTAK QQALVQQYLD
RVMQSAQRQV LIEATIVEVT LKDQYRAGID WSKALEGTTG WTINTLSGGS NALANTLTPF
IQATYTNAGS NGFTAAIDLL ESFGKAKVLS SPKLMALNNQ TALLKVVDNL VYFNVKADTT
ATANVGTTTT FTTTPQTVPV GIVMTMTPQI NENGMVSLTV RPTISRNVGF VRDPNPSIPV
AIPNQVPVIQ VREMESLLQV RSGQTVILGG LIQDDSNNAR DGIPGLSRPE GIGAVFGQHE
QINSQTELVI FLRPIVVANP SLEDEELRRF QHLLPRVGSR Q
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