Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tbd_0533 |
Symbol | |
ID | 3673784 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiobacillus denitrificans ATCC 25259 |
Kingdom | Bacteria |
Replicon accession | NC_007404 |
Strand | - |
Start bp | 557855 |
End bp | 559291 |
Gene Length | 1437 bp |
Protein Length | 478 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637709204 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_314291 |
Protein GI | 74316551 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACACA GCCTCCAGCT CAAGCTCGGT CAGCATCTCA CGCTGACGCC TCAGCTGCAG CAGTCGATCC GGCTGCTGCA GCTGTCGACG CTCGAGTTGA ACCAGGAACT CGAGCAGATG CTGCAGGACA ATCCGCTGCT CGAACGCGAG GACGACGACG AGGCGAACCA CGCCGCGACC GAAGCACCGG CGCACACCGC GGAAGCCGAA GCGCAAAGCA GCGAAACGCC GCAACTCGAG CGCGCCGAGG CGGAGCCCGT GACGACGCTC GACGACTCCG ACTGGAACGA CTACAGCGCC GGCAGTGCCG ACGAGGACGA GGACGGCGAT TACGCCCAAG GTTCGGTCGC GGGCGCGACG CTGCGCGAAC ACCTGCTCAA CCAGCTGATC GTGAGCCCGC TCACCGTGCG CGACCGCGTG CTCGTCGCCG CACTCATCGA CGATCTCGAC GAAGCCGGTT TCCTCACCCA GCCGCTCGAA GACATCACGG CGAGCCTGCG CGACGAACTC GAGGACCTCG AGCACGAGGA AGTCGAAACC GCGCTCAAGC ACCTGCAGAA CATGGACCCG ACCGGCGTCG GCGCGCGCAA TCTGGCCGAA TGCCTGACGC TGCAACTGCG CGCCCTTCCC GACGACACGC CGGTGCGCGC GGCAGCGATG CGGCTCACCA CGCACTATCT CGAGCTGCTG GCGGCGCGCG ACGTCGGCAA GCTGAAAAAA ATGCTCGGGA TCGACGATCC GACGCTGCGC GCGGCGCGCG CGCTGATCCT CTCGCTCAAT CCGCGGCCCG GCTCGGCCTT CAGCGCCGAA CAGACGCACT ACGTCATCCC CGACGTCTAC GTGCGCAAGG TCAAGGGCAT GTGGATCGCG AGCCTGAACG CCGACGCGAT GCCCAAGCTG CGGGTCAACC GCGTCTACGC CGACATCCTG GCGCGACATC GCGAATCGGG CGGCAGCCAG CTCGCGAGCC AGCTACAGGA GGCGCGCTGG CTGATCAAGA ACGTCCAGCA ACGCTTCGAC ACGATCCTGC GCGTCTCTCA GGCGATCGTC GATCGGCAGA AGCATTTCTT CGAGCACGGC GAGGTCGCGA TGCGGCCGCT GGTGCTGCGG GAGATCGCCG ACGCGGTCGA TCTGCACGAA TCGACGATCT CGCGCGTGAC GACGCAGAAA TTCATGATGA CCCCGCGCGG CCTCTACGAA CTCAAGTACT TCTTCGGCAG CCACGTCGCG ACCGACAACG GCGGCGCGTG CTCGTCGACC GCGATCCGCG CGCTGATCAA GCAGTTGATC GCCGCCGAAA GCGGCAAGAA GCCGTTGTCC GACGGTCAGC TCGCCGACGT CCTCGGCCAG CAGGGCATCG TCGTCGCGCG CCGAACGGTA GCCAAATACC GCGAGTCGCT GCAGATCCCT CCGGCCAACA TGCGCCGCGC CCTCTGA
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Protein sequence | MKHSLQLKLG QHLTLTPQLQ QSIRLLQLST LELNQELEQM LQDNPLLERE DDDEANHAAT EAPAHTAEAE AQSSETPQLE RAEAEPVTTL DDSDWNDYSA GSADEDEDGD YAQGSVAGAT LREHLLNQLI VSPLTVRDRV LVAALIDDLD EAGFLTQPLE DITASLRDEL EDLEHEEVET ALKHLQNMDP TGVGARNLAE CLTLQLRALP DDTPVRAAAM RLTTHYLELL AARDVGKLKK MLGIDDPTLR AARALILSLN PRPGSAFSAE QTHYVIPDVY VRKVKGMWIA SLNADAMPKL RVNRVYADIL ARHRESGGSQ LASQLQEARW LIKNVQQRFD TILRVSQAIV DRQKHFFEHG EVAMRPLVLR EIADAVDLHE STISRVTTQK FMMTPRGLYE LKYFFGSHVA TDNGGACSST AIRALIKQLI AAESGKKPLS DGQLADVLGQ QGIVVARRTV AKYRESLQIP PANMRRAL
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