Gene Tbd_0429 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTbd_0429 
SymbolrpsD 
ID3671696 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiobacillus denitrificans ATCC 25259 
KingdomBacteria 
Replicon accessionNC_007404 
Strand
Start bp449046 
End bp449675 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content62% 
IMG OID637709095 
Product30S ribosomal protein S4 
Protein accessionYP_314187 
Protein GI74316447 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0522] Ribosomal protein S4 and related proteins 
TIGRFAM ID[TIGR01017] ribosomal protein S4, bacterial/organelle type 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.857828 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0845292 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTCGTA ATCTTGATCC CAAATGTCGT CAGTGCCGCC GGGAAGGCGA GAAACTCTTT 
CTGAAGGGCG AGAAGTGTTT CACTGACAAG TGTGCCATCG AGCGTCGCGC CTACGCCCCC
GGGCAGCACG GCCAGAAGAG CGGTGCGCGC CTGTCGGGTT ATGGCGTTCA GCTGCGTGAA
AAGCAGAAGA TCCGCCGCAT CTACGGCGTG CTCGAAGGCC AGTTCCGCCT GACCTACAAG
CGTGCGGACA GCCGCAAGGG CGTGACCGGC GAAAACCTGC TGTCGATGCT CGAATCGCGT
CTCGACTCGG TGTGCTACCG CATGGGCTTC GGCGCCTCGC GCACCGAGGC ACGGCAGATC
GTCCGCCACA ACGGCATCGT CGTGAACGGC CGTCGCGTCA ATATCCCGTC GTATCAGGTA
CGCCCAGGCG ACGTCGTCGA GGTTGCGGAA AAGTCGAAAG CGCAATTGCG CATCAAGGCG
GCCGCCGATG CGACCGCGAC GCGCGGCTAT CCGGAATGGA TCGAAGTCGA CGCGAAGGCG
CTCAAGGGGA CTTACAAGGC ACACCCGCAG CGTTCGGAAC TGCCGTCGAC CATCAACGAG
TCGCTGGTCG TCGAACTGTA CTCCAAATAA
 
Protein sequence
MARNLDPKCR QCRREGEKLF LKGEKCFTDK CAIERRAYAP GQHGQKSGAR LSGYGVQLRE 
KQKIRRIYGV LEGQFRLTYK RADSRKGVTG ENLLSMLESR LDSVCYRMGF GASRTEARQI
VRHNGIVVNG RRVNIPSYQV RPGDVVEVAE KSKAQLRIKA AADATATRGY PEWIEVDAKA
LKGTYKAHPQ RSELPSTINE SLVVELYSK