| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0422 |
|---|
| Symbol | rpsE |
|---|
| ID | 3671689 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiobacillus denitrificans ATCC 25259 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007404 |
|---|
| Strand | + |
|---|
| Start bp | 445334 |
|---|
| End bp | 445849 |
|---|
| Gene Length | 516 bp |
|---|
| Protein Length | 171 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637709088 |
|---|
| Product | 30S ribosomal protein S5 |
|---|
| Protein accession | YP_314180 |
|---|
| Protein GI | 74316440 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0098] Ribosomal protein S5 |
|---|
| TIGRFAM ID | [TIGR01021] ribosomal protein S5, bacterial/organelle type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.287425 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.230191 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCGTA CAGCACCTAC CAGTAACGAA GAGCGCGGCG ACGGCTTGCG CGAGAAGATG
ATTTCGGTCA ACCGCGTCAC CAAAGTGGTG AAGGGCGGCC GGATCATGGG TTTTGCCGCG
CTGACCGTGG TCGGCGACGG GGACGGCGGA ATCGGCATGG GCAAGGGCAA GTCCCGCGAG
GTGCCGGTTG CCGTGCAGAA GGCCATGGAA GAGGCACGTC GCAAGCTGGT CAAGATCAGC
CTGAAGAACG GCACTTTCCA CCATACGGTG GTGGGCCAGC ATGGCGCCTC GCGCGTGCTG
ATCCAGCCGG CATCCGAAGG TACCGGCATC ATCGCCGGTG GCGCGATGCG CGCGGTGTTC
GAGGTCATGG GCGTGCAAAA CGTCTTGGCC AAGTGTCTCG GTTCGACCAA TCCTTACAAC
GTCGTGCGCG CGACGATCGA TGGTTTGATG AAAATGTCGA CGCCGTCCGA GATCGCCGCG
AAGCGCGGCA AGTCGGTCGA AGACATCACG GGGTAA
|
|---|
| Protein sequence | MARTAPTSNE ERGDGLREKM ISVNRVTKVV KGGRIMGFAA LTVVGDGDGG IGMGKGKSRE
VPVAVQKAME EARRKLVKIS LKNGTFHHTV VGQHGASRVL IQPASEGTGI IAGGAMRAVF
EVMGVQNVLA KCLGSTNPYN VVRATIDGLM KMSTPSEIAA KRGKSVEDIT G
|
|---|
| |