Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tbd_0406 |
Symbol | rplD |
ID | 3671673 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiobacillus denitrificans ATCC 25259 |
Kingdom | Bacteria |
Replicon accession | NC_007404 |
Strand | + |
Start bp | 438291 |
End bp | 438908 |
Gene Length | 618 bp |
Protein Length | 205 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637709072 |
Product | 50S ribosomal protein L4 |
Protein accession | YP_314164 |
Protein GI | 74316424 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0088] Ribosomal protein L4 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0000000159199 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.149553 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATTTGA CGGTCATTAA CGATCGGGGA GAGCAGGTCG CGAGCGTCGC CGCGTCCGAC GAAACCTTCG GTCGCGATTA CAACGAGGCG CTGGTCCATC AGGTTGTCAC CGCCTTTCAG GCCAATGCGC GCAGCGGTAA CCGTGCGCAG CAGACGCGCG CCGAGGTCAG TGCATCGACG CACAAGCCGT GGCGGCAAAA GGGCACTGGC CGTGCGCGTT CCGGTCGTGC GTCGAGCCCG ATCTGGCGCG GGGGTGGTGT GACCTTCCCG AACAAGCCGA ACGAGAACTT CACGCACAAG GTGAACCGCA AGATGTATCG CGCCGGTCTG GCCGCGATCC TCTCCCAGCT TGCGCGTGAA GGCAAACTCA AGGTCGTCGA AAGCCTCGGC ATTGAGTCGC CGAAGACCAA GTTGCTCGCG GGCAAGCTGA AGTCGATGGG CTACGGCAAG GTCATGATCA TCGCCGACGC GATCGACGAC AACCTGTGGC TGTCGTCGCG GAACCTGCCG AACGTCTACG TGGTCGAGCC GCATCAGGCG GACCCGTGGA GCCTGGTCAA ATTCGGTAAC GTGCTGATCA CCAAGGCGGC GATCAAGCAG TTTGAGGAGA TGGTGTGA
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Protein sequence | MDLTVINDRG EQVASVAASD ETFGRDYNEA LVHQVVTAFQ ANARSGNRAQ QTRAEVSAST HKPWRQKGTG RARSGRASSP IWRGGGVTFP NKPNENFTHK VNRKMYRAGL AAILSQLARE GKLKVVESLG IESPKTKLLA GKLKSMGYGK VMIIADAIDD NLWLSSRNLP NVYVVEPHQA DPWSLVKFGN VLITKAAIKQ FEEMV
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