| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0399 |
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| Symbol | |
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| ID | 3671666 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | + |
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| Start bp | 428560 |
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| End bp | 432756 |
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| Gene Length | 4197 bp |
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| Protein Length | 1398 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637709065 |
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| Product | DNA-directed RNA polymerase subunit beta' |
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| Protein accession | YP_314157 |
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| Protein GI | 74316417 |
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| COG category | [K] Transcription |
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| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
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| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.589703 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0776208 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGCAC TGTTGGATCT ATTCAAGCAG GCCACCCACG AGGAAGAATT CGACGCCATC
AAGATCGGCC TGGCGTCGCC GGACAAGATC CGCTCCTGGT CGTACGGCGA AGTGAAGAAG
CCGGAGACCA TCAACTACCG TACCTTCAAG CCGGAGCGTG ACGGCCTGTT TTGCGCCAAG
ATCTTCGGTC CGGTCAAGGA CTACGAGTGC CTGTGCGGCA AGTACAAGCG CCTCAAGCAC
CGCGGCGTGA TCTGCGAGAA GTGCGGCGTC GAAGTGACGC TATCGAAGGT GCGTCGCGAG
CGCATGGGCC ACATCGAGCT CGCCAGCCCG GTCGCCCACA TCTGGTTCCT GAAGTCGCTG
CCGAGCCGGC TCGGCATGGT GCTCGACATG ACGCTGCGCG ACATCGAGCG CGTGCTCTAC
TTCGAAGGCT TCGTCGTCGT CGAGCCCGGC ATGACGCCGC TCAACCGCGG CCAGCTGCTG
ACCGAGGAGG ACTACCTCGG CAAGCTCGAG GAGTACGGCG ACGAGTTCAA GGCGCTCATG
GGCGCCGAGG GTGTGCGTGA GCTGTTGCGT TCGCTCGACG TCGCCAGCGA AGTCGAAACC
CTGCATTCCG AAATCAGCAA GACCGGCTCC GACACCAAAC TCAAGAAGCT GTCCAAGCGC
CTCAAGATCC TCGAGGGTTT CCAGAAGTCG GGCATCAAGC CCGAATGGAT GATCCTCGAG
GTGCTGCCGG TGCTGCCGCC GGAGCTGCGT CCGCTGGTGC CGTTGGACGG CGGCCGCTTC
GCGACCTCCG ACCTCAACGA TCTCTACCGC CGCGTCATCA ACCGCAACAA CCGCCTGAAG
CGGCTGCTGG AGCTGAAGGC GCCCGAGATC ATCGTGCGCA ACGAAAAGCG CATGCTGCAG
GAAGCGGTCG ATTCGCTGCT CGACAACGGC CGTCGCGGCA AGGCGATGAC CGGCGCCAAC
AAGCGTCCGC TGAAGTCGCT GGCCGACATG ATCAAGGGCA AGAGCGGCCG CTTCCGTCAG
AACCTGCTCG GCAAGCGCGT CGACTACTCG GGCCGTTCGG TCATCGTCGT CGGCCCGACG
CTCAAGCTGC ATCAGTGTGG CCTGCCGAAG AAGATGGCGC TCGAACTCTT CAAGCCCTTC
ATCTTCAACC GCCTCGAGGT ATTGGGGCTC GCGACCACGA TCAAGGCCGC GAAGAAGATG
GTCGAGGACG AAGAGCCGAT CGTCTGGGAT CTGCTCGAAG AGGTCATCCG CGAGCATCCG
GTGATGCTGA ACCGCGCGCC GACGCTGCAC CGCCTGGGCA TCCAGGCGTT CGAGCCCGTG
CTGATCGAAG GCAAGGCGAT CCAGCTGCAT CCGCTCGTCT GTGCGGCGTT CAACGCCGAC
TTCGACGGCG ACCAGATGGC CGTCCACGTG CCGCTGTCGC TCGAAGCGCA GGCCGAAGCC
CGTACCCTGA TGCTGGCGTC GAACAACGTG CTGTCGCCCG CCAACGGCGA GCCGATCATC
GTCCCCTCGC AGGACATCGT GCTGGGTCTC TATTACATGA CGCGCGAGAA GGTGAATGCG
AAGGGCGAGG GCATGATGTT CGCCGACGTG ACCGAAGCGC GCCGCGCCTA CGACAACCGC
GAGGCCGAAC TGCATGCGCG CGTGACGGTG CGCATCAAGG AAGTGACGCT TGACGAGAAC
AAGAACCGCG TCGAGACCGT CAAGCGCGTC GAGACCACGC TCGGTCGCGC GCTGCTGTCC
GAAATCCTGC CGCCGGGGCT GCCCTTCAGC TTCGTCGACA AGGCGCTGAA GAAGAAGGAG
ATCTCCAAGC TCATCAACGC CAGCTTCCGC CGCTGTGGCC TGCGCGAGAC GGTGATCTTC
GCCGACAAGC TGATGTACAC CGGCTTCACG TTCGCGACCC GCGCGGGCAT GTCGATCGCG
ATCAAGGACA TGCTGATTCC GCAGGAGAAG GGCCAGATCC TCGGCGCGGC CGAAGCCGAA
GTGAAGGAAA TCGAATCGCA GTACACCTCG GGCCTCGTCA CCCAGGGCGA GCGCTACAAC
AAGGTCGTCG ACATCTGGGG GCGCGCGGGC GACGCCGTCG CCAAGGCGAT GATGGGACAG
CTCGGCGGCG AGAAGGTCAC CGACCGTCAG GGCAAGGAAG TCACCCAGGA GTCGTTCAAC
GCGATCTACA TGATGGCCGA CTCGGGTGCG CGGGGCTCCG CTGCCCAGAT CCGCCAGCTC
GCGGGTATGC GCGGCCTGAT GGCGAAGCCG GACGGCTCGA TCATCGAGAC GCCGATCACG
GCGAACTTCC GCGAAGGCCT GAACATGCTT CAGTACTTCA TCTCGACGCA CGGCGCGCGC
AAAGGCCTCG CCGACACCGC GCTGAAGACC GCGAACTCCG GCTACCTGAC GCGCCGCCTG
GTCGACGTGA CGCAGGATCT CGTGGTGACC GAGGACGACT GCGGCACCAA GAACGGCCTG
CTCGTCAAGG CACTGGTCGA GGGTGGCGAG GTCGTCGAGG CGCTGCGCGA GCGCATCCTC
GGGCGCGTCG CGGCGAGCGA CATCATCAAT CCGGAAACGC AGGAAACCGT TTTCGAAGCC
GGTACCCTGC TATCCGAGGA CGTGGTCGAC ACCATCGAGG CGCTCGGCAT CGACGAGGTG
CGCGTGCGCA CGCCGTTGAC CTGCGAGACG CGCTACGGCC TGTGCGCCAA CTGCTACGGA
CGCGACCTCG GCCGCGGCTA CCTCGTCAAC GTCGGCGAGG CGGTCGGCGT GATCGCCGCG
CAGTCGATCG GCGAGCCGGG CACCCAGCTC ACGATGCGCA CCTTCCACAT CGGTGGTGCG
GCCTCGCGAG CCGCGGCGGC GAGCCAGCTC GAAGCGAAGT CGAACGGCGC CGTGCAGTAC
ACCGCGACGA TGCGTTACGT CACCAACGCG CGCAAGGAAC TCGTGGCGAT CTCGCGCAGC
GGCGAAATTC TCATCGCCGA CGACAGCGGC CGCGAGCGGG AGCGCCACAA GGTGCCGTAC
GGCGCGACGC TCATGGTCAC CGACGGCGCC AAGATCAAGG CCGGCGCCGT GCTCGCGACC
TGGGACCCGC ATACCCGTCC GATCATCACC GAGTACGCCG GCCGCGTGCG CTTCGAGAAC
GTCGAGGAAG GCGTGACGGT CGCCAAGCAG GTCGACGACG TCACCGGCCT GTCGACGCTC
GTGGTCATCG ATCCCAAGCG CAAGAGCACG AGCACCAAGG GCGTGCGCCC GCAGGTCAAG
CTGCTCGATG ACGCCGGCAA CGAATTGAAG ATCGCGGGTA CGGACACGCT CGTCAACATC
ACCTTCCAGA TCGGCTCGAT CATCACCGTG AAGGACGGTC AGGACGTGGC CGTGGGCGAC
GTGCTCGCGC GTATCCCGCA GGAAACGTCG AAGACCCGCG ACATCACCGG CGGTCTACCG
CGTGTGGCCG AGCTGTTCGA GGCGCGTTCG CCAAAGGACG CCGGCGTGCT GGCCGAAGTC
ACCGGTACTG TGTCCTTCGG CAAGGACACC AAAGGCAAGC AGCGCCTGGT CATCACCGAC
CTCGACGGCG TCGCGCACGA GTATCTGATC ACGAAGGAGA AGCATGTCAC CGCCCACGAC
GGCCAGATCG TCCAGAAGGG CGAAATGATC GTCGACGGCC CGGTCGATCC GCACGACATC
CTGCGTCTGC AAGGCGTCGA GGCGCTCGCC TCCTACATCA CCGACGAAGT CCAGGACGTC
TACCGTCTGC AGGGCGTGAA GATCAACGAC AAGCACATCG AGGTCATCGT GCGTCAGATG
CTGCGTCGTG TCGTCGTCGC CGATCCGGGC GACACCGGCC TCATCCCGGG CGAGCAGGTC
GAGCGTTCGG AAGTGCTGCA GATCAACGAC GAAATGATCG CCGCGGGCAA GGAGCCGGCG
GTCTACGATC CGATCCTGCT CGGCATCACC AAGGCGTCGC TGTCGACCGA CTCGTTCATC
TCGGCGGCTT CCTTCCAGGA AACGACCCGC GTCCTCACCG AGGCGGCGAT CATGGGCAAG
AAGGACGAGC TGCGCGGGCT GAAGGAAAAC GTGATCGTCG GCCGCCTTAT CCCGGCGGGC
AGCGGCCTCG CCTACCACAA CACCCGTCGC CGTCAGGCCG CGGGCGAGGA CATGGGAGCC
GACCGTTTGC TCGAGGGCGG CGAAACCCCG GCGGCCGAGA ATCAGGAAGT GGCTTGA
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| Protein sequence | MKALLDLFKQ ATHEEEFDAI KIGLASPDKI RSWSYGEVKK PETINYRTFK PERDGLFCAK
IFGPVKDYEC LCGKYKRLKH RGVICEKCGV EVTLSKVRRE RMGHIELASP VAHIWFLKSL
PSRLGMVLDM TLRDIERVLY FEGFVVVEPG MTPLNRGQLL TEEDYLGKLE EYGDEFKALM
GAEGVRELLR SLDVASEVET LHSEISKTGS DTKLKKLSKR LKILEGFQKS GIKPEWMILE
VLPVLPPELR PLVPLDGGRF ATSDLNDLYR RVINRNNRLK RLLELKAPEI IVRNEKRMLQ
EAVDSLLDNG RRGKAMTGAN KRPLKSLADM IKGKSGRFRQ NLLGKRVDYS GRSVIVVGPT
LKLHQCGLPK KMALELFKPF IFNRLEVLGL ATTIKAAKKM VEDEEPIVWD LLEEVIREHP
VMLNRAPTLH RLGIQAFEPV LIEGKAIQLH PLVCAAFNAD FDGDQMAVHV PLSLEAQAEA
RTLMLASNNV LSPANGEPII VPSQDIVLGL YYMTREKVNA KGEGMMFADV TEARRAYDNR
EAELHARVTV RIKEVTLDEN KNRVETVKRV ETTLGRALLS EILPPGLPFS FVDKALKKKE
ISKLINASFR RCGLRETVIF ADKLMYTGFT FATRAGMSIA IKDMLIPQEK GQILGAAEAE
VKEIESQYTS GLVTQGERYN KVVDIWGRAG DAVAKAMMGQ LGGEKVTDRQ GKEVTQESFN
AIYMMADSGA RGSAAQIRQL AGMRGLMAKP DGSIIETPIT ANFREGLNML QYFISTHGAR
KGLADTALKT ANSGYLTRRL VDVTQDLVVT EDDCGTKNGL LVKALVEGGE VVEALRERIL
GRVAASDIIN PETQETVFEA GTLLSEDVVD TIEALGIDEV RVRTPLTCET RYGLCANCYG
RDLGRGYLVN VGEAVGVIAA QSIGEPGTQL TMRTFHIGGA ASRAAAASQL EAKSNGAVQY
TATMRYVTNA RKELVAISRS GEILIADDSG RERERHKVPY GATLMVTDGA KIKAGAVLAT
WDPHTRPIIT EYAGRVRFEN VEEGVTVAKQ VDDVTGLSTL VVIDPKRKST STKGVRPQVK
LLDDAGNELK IAGTDTLVNI TFQIGSIITV KDGQDVAVGD VLARIPQETS KTRDITGGLP
RVAELFEARS PKDAGVLAEV TGTVSFGKDT KGKQRLVITD LDGVAHEYLI TKEKHVTAHD
GQIVQKGEMI VDGPVDPHDI LRLQGVEALA SYITDEVQDV YRLQGVKIND KHIEVIVRQM
LRRVVVADPG DTGLIPGEQV ERSEVLQIND EMIAAGKEPA VYDPILLGIT KASLSTDSFI
SAASFQETTR VLTEAAIMGK KDELRGLKEN VIVGRLIPAG SGLAYHNTRR RQAAGEDMGA
DRLLEGGETP AAENQEVA
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